TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCCTATCACATAATAGTCAAAACACTAAATGCACAAAACAAAGAA
AGAATATTAAATGTAGTGGAGGGAAAAAAGTTTAAGTAACATATAAATGC
AAACCAAACAGAATTATGCCACACTTCTCACCAGAGACTGTGAAAGCTAG
AAGATCCTGGGCAGATGTCATACAGACCATAAAAGAAAACAAATGCTGAC
CCAGGTTACTATATCCAGCAAAACTCCAAATTACCACAGATGGAGAAACC
AAGATATTCCATGACAAAAAAATTGCACAGTATCTTTCCACAATCCCAGC
CTTCCCAATGATAATACTTATTATACTCCACCACCAGGAGGGAAAATACA
CTCTAGAGAAAGCAAGAAATTATTCTTTCTACAAACCCAGGAGAAGGTAG
CCAAAACACATAATTCCAACTCTAAAAACAAAAATAACAGGAAGCAACAA
TCAGTATTCCTTAATTTCTCTCAACATCAATGGACTCAGTTCTCCAATGA
AAAGACATAGATTACTAGGACCCAGCATTTTGCTACATACAGGAAACACA
CCTTAATGGCAAAGAATGATAGACAATTTTCTAAGCAAATGATACCAAGA
AACGAGCTGGAGTAGCCAATCCAATATCTAATACAACTGACTTTCCACCT
AAAGTTATCAAAAATCATAAGGATAGAAACCTCATACATATCACAGG

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATCTGTAGTTAAAGATGTGACAAT
CTTGATACCAATTTTAATAGTCATGAGCCTGAACAAAGATGTCCTAGAGC
CAGAGTTGGTATATGCTGAGAACACAAACTTGTCAGCTAATTGATCAGAT
GCCTCTAGTTCTGACCAATCTTTTTTCTTGTGTGAACATTGACAGGTATG
TGGCAGATGGGAAATAATTCAATAATAAGGTGACATACTGATGTTCAGCA
ATAAAAAAAACCAAATCATTGACAAATATTTCTAAGTTTAAAAATATGTT
TTGAACGATATCTATATTACATTTTACTCCCCCCACCCCCTTGGAGATAT
TCCTCAAATATACTCTCAAGTTGGTGGCCTCGTTTGTTTTGAATATATTG
TTACACACAAACACCAATCACCAATGATAGCCATATACACATGCGTACAT
TATGTGTAAATGTGTGTATATCTGTGCATGTTGTCTGTGTATCTGTGTCT
GTATGAATTCATATGTGTGTGTGTGTGTGTGAACAGGAGAGAAATCATAC
CTTTTACTGAATTCCCAGACAGCATTCTTGCTTTACTGATATGAATATTA
AAAAAGAATCTACTACTGTGCCTTTGGTAGGTCCTGGATAAGTCCTTACT
ACTTTCTAAAGTCTATACTATTGCCCCTTGATAN

Query= MSMg01no186_k04.g1 MSMg01no186_k04.g1 CHROMAT_FILE:
MSMg01no186_k04.g1 PHD_FILE: MSMg01no186_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:41 2005
         (536 letters)



>mm_chr3_6134390_6135326
          Length = 937

 Score =  953 bits (493), Expect = 0.0
 Identities = 532/559 (95%), Gaps = 23/559 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatctgtagttaaagatgtgacaatcttgataccaattttaatagtcatgagcctgaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tatctgtagttaaagatgtgacaatcttgataccaattttaatagtcatgagcctgaaca 577

                                                                       
Query: 61  aagatgtcctagagccagagttggtatatgctgagaacacaaacttgtcagctaattgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aagatgtcctagagccagagttggtatatgctgagaacacaaacttgtcagctaattgat 517

                                                                       
Query: 121 cagatgcctctagttctgaccaatcttttttcttgtgtgaacattgacaggtatgtggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cagatgcctctagttctgaccaatcttttttcttgtgtgaacattgacaggtatgtggca 457

                                                                       
Query: 181 gatgggaaataattcaataataaggtgacatactgatgttcagcaat-aaaaaaaaccaa 239
           ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 456 gatgggaaataatccaataataaggtgacatactgatgttcagcaataaaaaaaaaacaa 397

                                                                       
Query: 240 atcattgacaaatatttctaagtttaaaaatatgttttgaacgatatctatattacattt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atcattgacaaatatttctaagtttaaaaatatgttttgaacgatatctatattacattt 337

                                                                       
Query: 300 tactccccccacccccttggagatattcctcaaatatactctcaagttggtggcctcgtt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 336 tactccccccacccccttggagatattcctcaaatatactctcaagttggtagcctcgtt 277

                                                                       
Query: 360 tgttttgaatatattgttacacacaaacaccaatcaccaatgatagccatatacacatgc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgttttgaatatattgttacacacaaacaccaatcaccaatgatagccatatacacatgc 217

                                                                       
Query: 420 gtacattatgtgtaaatgtgtgtatatctgtgcatgttgtctgtgtatctgtgtctgtat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gtacattatgtgtaaatgtgtgtatatctgtgcatgttgtctgtgtatctgtgtctgtat 157

                                                                       
Query: 480 gaattcata----------------------tgtgtgtgtgtgtgtgtgaacaggagaga 517
           |||||||||                      |||||||||||||||||||||||||||||
Sbjct: 156 gaattcatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacaggagaga 97

                              
Query: 518 aatcataccttttactgaa 536
           |||||| ||||||||||||
Sbjct: 96  aatcatgccttttactgaa 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space:   487602
Effective search space used:   487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)