BAC Information

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BAC

Clone NameMSMg01-187G01
Chromosome3 (Build37)
Map Location 39,066,612 - 39,221,617
singlet/doubletdoublet
Overlap geneLOC100041432
Upstream geneLOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
Downstream geneLOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187G01.T7 (MSMg01no187_g01.b1)MSMg01-187G01.TJ (MSMg01no187_g01.g1)
ACCAG378747AG378748
length730718
length of high quality
(start - end)
315 (46 - 360)641 (73 - 713)
definitionCHROMAT_FILE: MSMg01no187_g01.b1 PHD_FILE: MSMg01no187_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:40 2005CHROMAT_FILE: MSMg01no187_g01.g1 PHD_FILE: MSMg01no187_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,221,307 - 39,221,617)(39,066,612 - 39,067,252)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAATGATAGATATTATGCTGAACTGTGAGTCTAGATTCAGTATT
TGAGAAAACCAATTTCAGATCAGTATTAAAGGGTGTTGCATGAAGGGAGA
TGACTTCCACACCATATGCAGCGAGTTTTATCACAGTTTCTGGTTGCAGC
ATCGAGTATTGTGGACAAGGAGACTGTACCTCATGGGGATAAATGACACC
AGACTGTATTTGCACATGTTTCTGCTTGTCTGGACCACCCACCTGGTGGG
GAATTTCACCCTGGGCGGTGGTGTGTGTCACTGTGAACTGACCCTCCTGC
TGAGAATGACTAATACTAACCAGAAAGAGAAAAAAATATCAACTTAAAAA
GTACTTTCGGGACTATTTTCCAACATTAAGGTCAGCGCTTTGCCCTTAAA
CCCATAATTCTTGGTCTGTTTAAAATAGTGTCTTGTCTGTTATTCATCAC
CTTGCTTCCCTGAAGCACTTTGAACCCTCTAGTGAGGCCAGTTCATGTAG
AACAGCATCAGCTGGGGTGTCAGCAAGTGTTCTGAAATAGCAACCTCACT
TGAGGTTGACTGATTGGAAAAAATTATAAAATAATGAGGTCTGTACAGAG
TCACAGCCTCTCACCAAGGGTCTTGTGCTCCATGAAATTCTATGTAACAT
GGTTAAATATAGTGGTAACCCCTTCATGGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCTGCTTGGTCCACATCAATTCTTCT
GAAACTCTGCCTGTTTGGACGCTGCCAGCTTTTGTAACAACAGAGGACTC
TTTTTAAAAAGTGCTGACACACAATTTATCAAATTATCCTGACTGAAATT
CTACTTCCAAATAAAAGAGTCAAGAGTGAAGGAAAATATTTATATGATTA
AACATGGAGTTGGTTTGTACAGTTCTCCCACATTTAAACATCTGAAATTT
GTCAGCTAAGCTTTCTTACTGATAACCTACCTGCAAAGATGTTTCTGAGA
CCTCTCTGTTCCTTTGTGTGGTCTATACAAACTATAAATAGATTCAATTT
CTAGATTAAAATTGTTATTTATACTATCTTTTGTCTTAGATTTGGAAAAT
AATGGTTCTTTGAATATTGAATTCAAACCGACAAAGTTTATTTTTGCCAT
GTATGTTTCTCAATTGCCTTTTTAACTATTATTGTAAATTTAGATCATAG
AAGTCCAGAAATTAAGGAGCATGGTTAAGGCCTGCTACGGAATGGTTCTC
AGGTGGAGTTTCTCAAGATTCAGGCTCTGTAGATGAATTTGATGAGGCAA
GGTAGGCAAGGAAGGAGGGCTGAAGGGGGAAAGGAAGGGAACAATTGGGA
GGGAAGGACTAAGGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_g01.b1 MSMg01no187_g01.b1 CHROMAT_FILE:
MSMg01no187_g01.b1 PHD_FILE: MSMg01no187_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:40 2005
         (315 letters)



>mm_chr3_39221103_39221817
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaatgatagatattatgctgaactgtgagtctagattcagtatttgagaaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcttaatgatagatattatgctgaactgtgagtctagattcagtatttgagaaaac 456

                                                                       
Query: 65  caatttcagatcagtattaaagggtgttgcatgaagggagatgacttccacaccatatgc 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 455 caatttcagatcagtattaaagggtgttgcatgaagggagatgacttccacaccatgtgc 396

                                                                       
Query: 125 agcgagttttatcacagtttctggttgcagcatcgagtattgtggacaaggagactgtac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agcgagttttatcacagtttctggttgcagcatcgagtattgtggacaaggagactgtac 336

                                                                       
Query: 185 ctcatggggataaatgacaccagactgtatttgcacatgtttctgcttgtctggaccacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctcatggggataaatgacaccagactgtatttgcacatgtttctgcttgtctggaccacc 276

                                                                       
Query: 245 cacctggtggggaatttcaccctgggcggtggtgtgtgtcactgtgaactgaccctcctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cacctggtggggaatttcaccctgggcggtggtgtgtgtcactgtgaactgaccctcctg 216

                      
Query: 305 ctgagaatgac 315
           |||||||||||
Sbjct: 215 ctgagaatgac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no187_g01.g1 MSMg01no187_g01.g1 CHROMAT_FILE:
MSMg01no187_g01.g1 PHD_FILE: MSMg01no187_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:40 2005
         (641 letters)



>mm_chr3_39066412_39067452
          Length = 1041

 Score = 1185 bits (613), Expect = 0.0
 Identities = 634/641 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctgcttggtccacatcaattcttctgaaactctgcctgtttggacgctgccagcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tttctgcttggtccacatcaattcttctgaaactctgcctgtttggaagctgccagcttt 260

                                                                       
Query: 61  tgtaacaacagaggactctttttaaaaagtgctgacacacaatttatcaaattatcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaacaacagaggactctttttaaaaagtgctgacacacaatttatcaaattatcctga 320

                                                                       
Query: 121 ctgaaattctacttccaaataaaagagtcaagagtgaaggaaaatatttatatgattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaattctacttccaaataaaagagtcaagagtgaaggaaaatatttatatgattaaa 380

                                                                       
Query: 181 catggagttggtttgtacagttctcccacatttaaacatctgaaatttgtcagctaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggagttggtttgtacagttctcccacatttaaacatctgaaatttgtcagctaagct 440

                                                                       
Query: 241 ttcttactgataacctacctgcaaagatgtttctgagacctctctgttcctttgtgtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttactgataacctacctgcaaagatgtttctgagacctctctgttcctttgtgtggt 500

                                                                       
Query: 301 ctatacaaactataaatagattcaatttctagattaaaattgttatttatactatctttt 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatacaaactataaatagattcaacttctagattaaaattgttatttatactatctttt 560

                                                                       
Query: 361 gtcttagatttggaaaataatggttctttgaatattgaattcaaaccgacaaagtttatt 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 gtcttagatttggaaaataatggttcttagaatattgaattcaaaccgacaaagtttatt 620

                                                                       
Query: 421 tttgccatgtatgtttctcaattgcctttttaactattattgtaaatttagatcatagaa 480
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 621 tttgccatgtatgtttctcaattgcctttttaactattactgtaaatttagatcgtagaa 680

                                                                       
Query: 481 gtccagaaattaaggagcatggttaaggcctgctacggaatggttctcaggtggagtttc 540
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtccagaaactaaggcgcatggttaaggcctgctacggaatggttctcaggtggagtttc 740

                                                                       
Query: 541 tcaagattcaggctctgtagatgaatttgatgaggcaaggtaggcaaggaaggagggctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaagattcaggctctgtagatgaatttgatgaggcaaggtaggcaaggaaggagggctg 800

                                                    
Query: 601 aagggggaaaggaagggaacaattgggagggaaggactaag 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagggggaaaggaagggaacaattgggagggaaggactaag 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)