BAC Information

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BAC

Clone NameMSMg01-187N08
Chromosome3 (Build37)
Map Location 26,618,517 - 26,618,830
singlet/doubletsinglet
Overlap geneSpata16
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187N08.T7 (MSMg01no187_n08.b1)MSMg01-187N08.TJ (MSMg01no187_n08.g1)
ACCAG379045AG379046
length798758
length of high quality
(start - end)
318 (103 - 420)285 (87 - 371)
definitionCHROMAT_FILE: MSMg01no187_n08.b1 PHD_FILE: MSMg01no187_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:16 2005CHROMAT_FILE: MSMg01no187_n08.g1 PHD_FILE: MSMg01no187_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTGGCCCGTTTTTTTTTTGGCGCGGCTCCGCTTTTTATTTTTAATAATA
NNTTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATGTGATGAGGAAATGGAAGCATAAAGATCAAGTGGT
ATCCAGAAAGTTTATATCCAGGAGAAAATCGCCAACCTGGAGAGAGAAGG
TCTGCATAATTTCCACCAGAGAGCTGGACACTGGGGAGAAAAAGGCTGAC
ACGTGGGTTAAGACACAGAGCTTATAGAAGCAGAAAATTTTATATAAGCA
TAAACCCCAGCCTTCTACTACTAAGTGGAACAGGTTACCAGGTGATTTGA
TACAGCTTTAATACCTGGGAAATGGGGCAATAATACCTGCCTTATAGACT
TCATAGAGACACTGAGACTTTTTATGTCCCCCCCCCCCCCCATGTGTCTC
AGAATTGGTAAGAGTTTGTTACTAACGCCATCTTATAAAAACTTGCATCT
CTCTGGAATTGCCCTATAAACTTCTAATTCTATTTGATATAATAGATTCT
TATCGTTTCTTGCTTCTTAGTCTAGAATTTATTCTGCACTTCAGACTTCA
TGTTTCAAAATTTTTCATTACATCCCACCATCTCCATATTCTCAATCTAC
TCATTCAATACCCCCTTTTAGCTTATTTATTCAGCTTATCTAATTATTAC
CCTTATTTTTACGACTTTTTCACCACTTTATTTAGCGCTTTATCTATTGC
GCGCTGTAATATGCGTTTCCAGGCCTTGTTGCGTTTCAACACTGTTTG
TCTTTTTTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGTGCCACAA
ATTTGAAGAGAAGTGGTAGTCTTACCTGTGTTCACAGTGTAGGCACTCCT
GGGAGACCAGCTCTCTCCTGGTGGTATTTCTGTATGTAGCTTTGTGGCAC
AGGATCAGCTCTGGGTGCAGATGGACACCAGAAGGCTCCTGTTCCATGCT
GCTCCTTGGTTCCTTTGTCCTGAGGGTTCTGTCAGCTTCCTCTGATTAAG
AAGGCTCCTGTCCCAGGCCTCCCCTCAGTTCCTGGGTCCTGAGGGTTCTG
GGCAGGTTCCTCTGCACATCATTTGTGTTCCTACGTGCACTCACAGGCCT
GTCCACAATCCTGGGAGTTTCCCTCCCTCCCGGAGATATATAAGTATGGA
GCCCTATGGCAGAGGATCTGATAACTCCTCTTTTCATTTCTTGAGGACCC
CCCCCCCCCGCTGTACTGGTTTCCATGGTGACTGCACCAGTTTACACTTC
CACCAGCAGTGTATCTTCCTTCTGCTGACTGGGTGGATCACATTCATTGA
CTTGTGGAACCATCCTTGAATCTCTAGAATAAATCCCCTTTGTTAATGGT
GATTTTAACATGCTTGTGTGTTTAAATTTTTATTTTGTTACAATTTTCTG
GTGAAAATCTGTGTCATCAAGGATACTGACCCGTTATCATTCTCCACCTG
GCTTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_n08.b1 MSMg01no187_n08.b1 CHROMAT_FILE:
MSMg01no187_n08.b1 PHD_FILE: MSMg01no187_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:16 2005
         (318 letters)



>mm_chr3_26618314_26619030
          Length = 717

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatgtgatgaggaaatggaagcataaagatcaagtggtatccagaaagtttat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatgtgatgaggaaatggaagcataaagatcaagtggtatccagaaagtttat 263

                                                                       
Query: 64  atccaggagaaaatcgccaacctggagagagaaggtctgcataatttccaccagagagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atccaggagaaaatcgccaacctggagagagaaggtctgcataatttccaccagagagct 323

                                                                       
Query: 124 ggacactggggagaaaaaggctgacacgtgggttaagacacagagcttatagaagcagaa 183
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggacactggg-agaaaaaggctgacacgtgggttaagacacagagcttatagaagcagaa 382

                                                                       
Query: 184 aattttatataagcataaaccccagccttctactactaagtggaacaggttaccaggtga 243
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 383 aattttatataagcataaatcccagccttctactactaagtggagcaggttaccaggtga 442

                                                                       
Query: 244 tttgatacagctttaatacctgggaaatggggcaataatacctgccttatagacttcata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttgatacagctttaatacctgggaaatggggcaataatacctgccttatagacttcata 502

                          
Query: 304 gagacactgagactt 318
           |||||||||||||||
Sbjct: 503 gagacactgagactt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)