BAC Information

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BAC

Clone NameMSMg01-187N22
Chromosome3 (Build37)
Map Location 40,859,391 - 40,859,703
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2
Downstream genePgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187N22.T7 (MSMg01no187_n22.b1)MSMg01-187N22.TJ (MSMg01no187_n22.g1)
ACCAG379072AG379073
length733745
length of high quality
(start - end)		318 (45 - 362)655 (91 - 745)
definitionCHROMAT_FILE: MSMg01no187_n22.b1 PHD_FILE: MSMg01no187_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:19 2005CHROMAT_FILE: MSMg01no187_n22.g1 PHD_FILE: MSMg01no187_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATTTCCCTTTCAGAGGGATTAAAATGGCCCAGGCATGCCTCACA
TTAAGTGGTGGAATCCGTTTCTCCACCCTTTGAGTCTGCCTGGCCCTGGG
ACCTGCTCTGACGTAACAAAAAGCCCAGGAGTCAATCTTCTGTCCTTGGC
CTCTTGAGGGACAGCAAAGCTTCTACTCCTGGAGAGCATCTCCCATAGTG
CGAAAGGGACAGAGAAGCCCACCCTTTCCATGGCACTGGACACATGACAG
TATCCAGCCTGGGCAATCCCGGGTGACCCCAAGCAGAAAAACCACTGTAC
CCACATAAACAATTTTTTTTTGACCGCCCCCGCCTTTTTTTTTCTTCTTA
ACTTTTAGGAAGATTTACTACGCAAAACTACAAAACAATACTCCTGATGT
TTGAAAACACAGTGTTAATGCCAGAAAGCAAGTTTCACTTAAATTAGGTC
CATTCCACAGTAGCCATTCAAACCTCACTAGACACCACGCTAAATCTGCA
AGGGCTTTTATAAACTCACACCACTGAAGCTACTCTGCAGTCACCCTCCT
TCTGAGCACTGGGAGGGATGAACTCTCACTCACTCAGTGCTCACTGTCAT
CCTCCACTGAGTTGTGTCCCCAGCCATGCAGCCTATGCAGTAGTCACATC
CTGCTGATGTGACAAGATTCCCTGTATAAGCAA

ACTACTTTNCCCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACAAGTTG
TCCTCTGATTTCCACATGTGTGCCCGCCCCATACACACAAAATTAAAAAC
ATTTCATTTTTAAATTTCTATGCTGGGCAGTGGTGGCGCACACCTTTAAT
CTCAGCACTTGGGAAGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGC
CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCC
TGTCTCAAAAAAAAACCAAAAAAATAAAAAATAAGAAACCTATATGATGA
TAGGGCTCTAGGATGGCTGGGGATACACAGAAAAACCCTGTCTCAAAGCC
AAAAAAAGAAAAATAGAACAAAACAGAACCAACATAACATGTATTCGCTT
GTGGTAGGCAGTAGTTTTCTTTGCTCTAAGAATATTATTATTTTAAATTT
TATTCATTTATTTATTTATTTTATATGTGTTTTCCTGCATATATGTCTGC
ATCATGTATGTGCTGGTACCCAGGAGGCCAAAAGAATGTGCTAGATCTAA
GACTTGAGTTATAGATAGTTGTGTCTCACCATGTGTGTTCTGGAAATTGG
ACTTGGGTCCTTTAGAAGACCAACCAGGGTGTTAGAGAGGTGGCTCAGCA
GGTAAGAGCACTAACTGCTCTTCCAGAGGTCTTGAGTTCAAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_n22.b1 MSMg01no187_n22.b1 CHROMAT_FILE:
MSMg01no187_n22.b1 PHD_FILE: MSMg01no187_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:19 2005
         (318 letters)



>mm_chr3_40859187_40859903
          Length = 717

 Score =  553 bits (286), Expect = e-162
 Identities = 307/314 (97%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatttccctttcagagggattaaaatggcccaggcatgcctcacattaagtgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattctcatttccctttcagagggattaaaatggcccaggcatgcctcacattaagtgg 458

                                                                       
Query: 65  tggaatccgtttctccaccctttgagtctgcctggccctgggacctgctctgacgtaaca 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 457 tggaatccgtttctccaccctttgagtctgcctggccctgggacctgctctgccgtaaca 398

                                                                       
Query: 125 aaaagcccaggagtcaatcttctgtccttggcctcttgagggacagcaaagcttctactc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 397 aaaagcccaggagtcaatcttctgtccttggcctcttgagggacagcaaagcgtctactc 338

                                                                       
Query: 185 ctggagagcatctcccatagtgcgaaagggacagagaagcccaccctttccatggcactg 244
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 337 ctggagagcatctcccatagtgtgaaagggacagagaagcccactctttccatggcactg 278

                                                                       
Query: 245 gacacatgacagtatccagcctgggcaatcccgggtgaccccaagcagaaaaaccactgt 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gacacatgacagtgtccagcctgggcaatcccgggtgaccccaagcagaaaaaccactgt 218

                         
Query: 305 acccacataaacaa 318
           | ||| ||||||||
Sbjct: 217 a-ccaaataaacaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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