BAC Information

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BAC

Clone NameMSMg01-188A03
Chromosome3 (Build37)
Map Location 49,557,211 - 49,557,523
singlet/doubletsinglet
Overlap genePcdh18
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188A03.T7 (MSMg01no188_a03.b1)MSMg01-188A03.TJ (MSMg01no188_a03.g1)
ACCAG379167AG379168
length752738
length of high quality
(start - end)
316 (60 - 375)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no188_a03.b1 PHD_FILE: MSMg01no188_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:30 2005CHROMAT_FILE: MSMg01no188_a03.g1 PHD_FILE: MSMg01no188_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTGTGCTNNCTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTCCCGTCCGTGAGGAAGAGGTCACTGAATCC
TTCTCCCAGGAGCCTGTCTATCGGAGAATCGCGCCCCAAATCATAATCGC
TATCTCCTGCTTCGCTATCTCCACGGCCACTGTCTTTCAGGCTAAATTTA
TCCATGTCTTGAAGGGCATATCTAGAAAGATCAGTGAAAGAAACACACAG
TTTTTTACTCTTCGGCATTTAAGTTCCCCGAGACTTAGCAGCTGACACCA
GGGTAATTCATACCTATAGCTCCTGGAATATTTGTTTCCTCGAAAACTTG
GCCGTGGCTGATATTGCCCCTGGTGAATTTTGTACACACACCTGCCAGAC
CTGCTGGAAACCAAAGAGACAGAACTGACTTCCGGGGGAAACAGAAAAAA
ACACTCCTCACGCATTCACGTGCATTAAGGAAGAAAAGGGAATGCTAAGC
TCACACTTTCTATCTGTCAGGGGTTTACTTATGCTAGACCATGAAGAGGG
TACAGCCAGACACCAAACCCAGTTAAGATCCATTACAGAGAGATCTGTCT
GCTCTCAAAACACAAGTTGAGTTGTTCCTGCTTGAAAGACTTTTTAATAA
CTGCCTTCCTTTACAGCTTAGATAAAACTGTTAAAATACATACCTCATAT
AACCTCCAAACTCTGTAAAATACACTGTTAGTTCACATAATGATACAATG
CN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAG
AAGCACCTGAAAAAATGTTCAGCATCCTTAATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCAATCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGATGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCGCAA
TACCTCTCTTGTTTTATATCACCCCGACCACGTTCCAATTGGTAAGAAGG
ACACATGCTCCACTATGCTCATAGCAAACTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATTTACTCAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TCAAATTCCTAGGCAAATGGACGGACCTGGAGGGTATCATCTTGAGTGAG
GTAACCCAGTCACAAAAGAACTCACATGATATGTACTCACTGACAAGTGG
ATACTAGCTCAGAAACTTAGAATACCCAAGATTTCAGATACAATTTGCAT
AATCACTGCAACCTCAGAAATAACTAACACCCCAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_a03.b1 MSMg01no188_a03.b1 CHROMAT_FILE:
MSMg01no188_a03.b1 PHD_FILE: MSMg01no188_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:30 2005
         (316 letters)



>mm_chr3_49557008_49557723
          Length = 716

 Score =  605 bits (313), Expect = e-178
 Identities = 313/313 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcccgtccgtgaggaagaggtcactgaatccttctcccaggagcctgtctatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcccgtccgtgaggaagaggtcactgaatccttctcccaggagcctgtctatc 263

                                                                       
Query: 64  ggagaatcgcgccccaaatcataatcgctatctcctgcttcgctatctccacggccactg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggagaatcgcgccccaaatcataatcgctatctcctgcttcgctatctccacggccactg 323

                                                                       
Query: 124 tctttcaggctaaatttatccatgtcttgaagggcatatctagaaagatcagtgaaagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctttcaggctaaatttatccatgtcttgaagggcatatctagaaagatcagtgaaagaa 383

                                                                       
Query: 184 acacacagttttttactcttcggcatttaagttccccgagacttagcagctgacaccagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acacacagttttttactcttcggcatttaagttccccgagacttagcagctgacaccagg 443

                                                                       
Query: 244 gtaattcatacctatagctcctggaatatttgtttcctcgaaaacttggccgtggctgat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtaattcatacctatagctcctggaatatttgtttcctcgaaaacttggccgtggctgat 503

                        
Query: 304 attgcccctggtg 316
           |||||||||||||
Sbjct: 504 attgcccctggtg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)