ATTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTGTCTTTTTCTGNNNNN
ACAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATTGTGAATGGATTTCAAAAATAGAAAATAGGAAAAAAA
ACACATTTTATTGTCAAGTCTGGATAACTAATGTTTTTACTGAAGTAAAA
CTACAAAATTATGCTTATATGTTCTTAAAATACATATGCAAATGAAAAAT
TACACTGAAATGCAAAGTGCCCTGTATACAGTTTTACAGAGTTCCCATTG
TCTCTGGTTTTCATTGAAGAGGCAATTCACAAGCAAGTGTATATAAAAAT
CAACTAAATATCACTTTATATAAAAATAAAACCATCAAAATGCAGTTTGC
TATATAATGCAAGATGGTTATTTTAATCGCCCCCCCCCCCCTATAACATG
GGAGCAGTATTCATGAGACTCAGCTATTTAATGAATGATATTCCAGGGCC
CTGCTGGGAAAGATGGTCTACCAGGACACCCTGGGCAGCGTGTCGAGACT
GTAAGTGACTCCAATTTATTATTACTATCATTATCATCACTATCAACATT
AACACTATTATTATTATTCATTGGACTGAAAATTTCAATGGCTCTCACTA
CCATGTTACCATTAAAACTCTTTTTTACCTCCCACAATCTAATCTGCGTA
TTTTAATATTGCCTTTCAAAAATATGTTTGCCCTTTTATTTCCCTCTTCT
CATTTCATTATTCACAGAAATCATTTAATTCCACCTACTTCATTATTATT
TATCATTCTTCCATTTACATTAACTACTTCCATAN

TCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATCCAGGAATTGGATTGATAGCCCA
ACATTCTTTTAGAATATCATCCTGAGCTTCTCAGAGTGATGACAACCACC
AAGGGCAATGCAATTTGTGTTAAAGAATGGCAAGCCAATTTGACAAACCA
TTGAAGGTGAGCTTCAAAGGAAGTGCACTGAACTAGATTCCAAAGTTTTA
AAGATAGAAAAGCTCCTGCATAGCAGAAAGGAAAATGAATGAAAACACAT
CCATTATAACAATTGACTGGACATAATTAAGGAATAAAAAGAAATGTTTG
AACTTCTTGTGTTCCAGAAATGGCTTTAGCAAATTATAATACAGGATTTT
GTCTGCAGCTCTATTTATGAATATGATACTTGACTGTTTTTCTTTGTCTT
AAAAGTTTATTGTGATTTAAATGCTTGCAAACTAAGGACTCTTGGAAAAT
GAAGTGGATGCATTTGGCTGGAGGATCATGGGTCCAATGGATCAATTAGG
TTGCTGGATGGCAAAGTCAAGAGGATTGCCATGCTTCAGTCTAGCTATAC
ATTTTTCTAAGCCATAATTACTGCCACAGTTTTGGCAAAGAATAATTTAC
TATAACTCCCTTCTAGCATTCTATAATTAAAACTGGATCTTAAAAACCTG
NTTTGAAAACGTAATTACCTCCTCCTCTATATATTTGTAAN

Query= MSMg01no188_p10.b1 MSMg01no188_p10.b1 CHROMAT_FILE:
MSMg01no188_p10.b1 PHD_FILE: MSMg01no188_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:47 2005
         (318 letters)



>mm_chr3_113850092_113850809
          Length = 718

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaattgtgaatggatttcaaaaatagaaaataggaaaaaaaacacattttattg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaattgtgaatggatttcaaaaatagaaaataggaaaaaaaacacattttattg 263

                                                                       
Query: 64  tcaagtctggataactaatgtttttactgaagtaaaactacaaaattatgcttatatgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaagtctggataactaatgtttttactgaagtaaaactacaaaattatgcttatatgtt 323

                                                                       
Query: 124 cttaaaatacatatgcaaatgaaaaattacactgaaatgcaaagtgccctgtatacagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttaaaatacatatgcaaatgaaaaattacactgaaatgcaaagtgccctgtatacagtt 383

                                                                       
Query: 184 ttacagagttcccattgtctctggttttcattgaagaggcaattcacaagcaagtgtata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttacagagttcccattgtctctggttttcattgaagaggcaattcacaagcaagtgtata 443

                                                                       
Query: 244 taaaaatcaactaaatatcactttatataaaaataaaaccatcaaaatgcagtttgctat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaaaatcaactaaatatcactttatataaaaataaaaccatcaaaatgcagtttgctat 503

                          
Query: 304 ataatgcaagatggt 318
           |||||||||||||||
Sbjct: 504 ataatgcaagatggt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no188_p10.g1 MSMg01no188_p10.g1 CHROMAT_FILE:
MSMg01no188_p10.g1 PHD_FILE: MSMg01no188_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:47 2005
         (290 letters)



>mm_chr3_113905029_113905718
          Length = 690

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatccaggaattggattgatagcccaacattcttttagaatatcatcctgagcttctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 488 aaatccaggaattggattgatagcccaacattcttttagaatatcatgctgagcttctca 429

                                                                       
Query: 61  gagtgatgacaaccaccaagggcaatgcaatttgtgttaaagaatggcaagccaatttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gagtgatgacaaccaccaagggcaatgcaatttgtgttaaagaatggcaagccaatttga 369

                                                                       
Query: 121 caaaccattgaaggtgagcttcaaaggaagtgcactgaactagattccaaagttttaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 caaaccattgaaggtgagcttcaaaggaagtgcactgaactagattccaaagttttaaag 309

                                                                       
Query: 181 atagaaaagctcctgcatagcagaaaggaaaatgaatgaaaacacatccattataacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atagaaaagctcctgcatagcagaaaggaaaatgaatgaaaacacatccattataacaat 249

                                                           
Query: 241 tgactggacataattaaggaataaaaagaaatgtttgaacttcttgtg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgactggacataattaaggaataaaaagaaatgtttgaacttcttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)