BAC Information

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BAC

Clone NameMSMg01-189J14
Chromosome3 (Build37)
Map Location 146,541,137 - 146,541,416
singlet/doubletsinglet
Overlap geneTtll7
Upstream geneDdah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540
Downstream genePpia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189J14.T7 (MSMg01no189_j14.b1)MSMg01-189J14.TJ (MSMg01no189_j14.g1)
ACCAG380229AG380230
length720732
length of high quality
(start - end)
247 (89 - 335)281 (90 - 370)
definitionCHROMAT_FILE: MSMg01no189_j14.b1 PHD_FILE: MSMg01no189_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:37 2005CHROMAT_FILE: MSMg01no189_j14.g1 PHD_FILE: MSMg01no189_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGGGGTCCTGGAAGCAA
CAGAAAATACCTCCTCTGTTAAAGTCTAAGGCTAGGGAGTAGAGCACACA
AGCTATGCAATAAATGGGGAACCTGAACGGAGATAAATGGTAGTCTTCCA
AACAAAACTTCCATTGTGAAAGTCAACTGCCTTGGGCCTAAAGAGAAGAC
TTGGTCAGTAAAGTATTTGAAACATAAACATGAGGATCTAAGTTTGATTC
CAATATCCCACATAAAAAGCTGTGCATGGTGGAACATAGTTGTCATTCTA
TGGCCAAGAATAGAAAGGCAGTCAGATCCCTCATGTTCTTTGGCCACGCC
CCCTCCCACATGAACTGGTGAGTCCAGGCAGTAGTGGTTATACCCTGCCT
CAAACATGAAAAGGATACCTGAGCTGATGATCTCTGGCCTCTACATGTGT
GTGCACACATATGCACATATAAGCCCCCACTGAAATACCTAGCTAATTGC
ACAAGACACTTTGCTGTTCAAATAAGCCACGTTGCTTTTTATCGACTCAC
TGAGGTGTATGGGCTCTTACTCATGGCGTACTAAAGAGGAAGACTATTGG
AGCTCACAAAGAACTACAGCTACATGAATTATCTTACTAGATTGTGAAAA
ATTCAATGACTGTTAAGCATACCTAATCCATCTTTGTTACCCTAAGTCCC
AGTGAGAAGCCTATAAAGTT
GCTTCTNNNTTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTGGAAAT
TGTGTGGACTAGGTTTATGAAGCCAGTAGTTCTATTTTCCCTTGGCCTGG
TGGCATAACAATGGGCAGACCCGTGAGTATGACAGATGAGTCAGGCCCCT
GATGTCAGTGTTATAAGAATCGAGAGGAATGGTAATAGTCCAGGCCAGTC
TGCTAGAGTTGTCTATGATGGCTAATAGTGATTGTCAACTGGACAGGTTC
TAGAATCCCTTAAGGGACAACCTGCAGGCTTGCTGGGAGGGGTTATCTAG
ATAAGTTCAGGCAGAAAGGCTCATTCTCTGCTGCCCCCCCCCCCCTTCCA
TGGCTGGGATCCTGGACTGAGTGACATGGAGTTAGCTCAACAGCAGCGTT
CATCATTAATGACTTCTTGGTTACGAATGCAATGTGGCCAGCTCTCTGTA
GGCTCCCACTGCTGCAGCATGGACTGTTGCCCTCAGACGAGGGACTAGTG
TGAACTCCACCTTCCCTAAGTAGCTTCTATCAGGCGTTTTGTCGCAGCAA
CGAGACAAGTAGCTAACACAGTTTCTGAGTCTTCTTCCATGTGTTGAAGT
TAGTACAAATACATATTCGTGATACACATCTGTGTTAATATGTGAAATAA
AACCTGTTTTGTCTGGCGTTCTGTTGTTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_j14.g1 MSMg01no189_j14.g1 CHROMAT_FILE:
MSMg01no189_j14.g1 PHD_FILE: MSMg01no189_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:37 2005
         (281 letters)



>mm_chr3_146540937_146541617
          Length = 681

 Score =  458 bits (237), Expect = e-133
 Identities = 270/281 (96%), Gaps = 1/281 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttggaaattgtgtggactaggtttatgaagccagtagttctattttcccttggcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttggaaattgtgtggactaggtttatgaagccagtagttctattttcccttggcctg 260

                                                                       
Query: 61  gtggcataacaatgggcagacccgtgagtatgacagatgagtcaggcccctgatgtcagt 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gtggcataacaatgggcggacccgtgagtatgacagatgagtcaggcccctgatgccagt 320

                                                                       
Query: 121 gttataagaatcgagaggaatggtaatagtccaggccagtctgctagagttgtctatgat 180
           |||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttacaggagtcgagaggagtggtaatagtccaggccagtctgctagagttgtctatgat 380

                                                                       
Query: 181 ggctaatagtgattgtcaactggacaggttctagaatcccttaagggacaacctgcaggc 240
           |||||||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||
Sbjct: 381 ggctaatagtgattgtcatctggacaggttctagaatcccctaagagacaac-tgcaggc 439

                                                    
Query: 241 ttgctgggaggggttatctagataagttcaggcagaaaggc 281
           ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 ttgctgggaggggttatctagataagttcaggcggaaaggc 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)