CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAAAGAATTCTACAGATAGGGATCATTACCCAGATGGACATTTT
AGTCACATGTCACATTATTTCTGCCTGGTCTGGAGCAGAGAGCTTTCCTT
GGTAGGTTTTCTTATCAGATAATTAAGAATATTTATATACATTCAATAGA
ATGTAATCATAGCTTTCCTGCTCTTTCCTAGAAAGCCAGCATGTATACAG
TAATCTGTTAAGGTTTATGGCTCCTGGTTCCAGACTGAAATGACCATCCA
GGAAATTCAGGACATCACTTTCCTACCAAAGGCATGACTTGGGAGGTAGC
TGTCCATTGTTCTGACTATGACTGAGCGCTACTCAGTCTTGGTTTTACAT
GGTGATGATTATGAAGAAGTTCATTCTAATGACCTTTAAGTCTGTGAATA
TCTGTAAATCACCAAACAAGGGCAGCTTAACATTAATATCACCAGAGTTA
TTTTTCTTTTACTCTGAATCATACATGATATTACCAAAATATGCGGGGTT
TTGTTTGTTTGTTTGTTTGATTCCTCTAGCACTAAAATACGTGTTGATCC
TTCTGAAAACTTCTGCTCTAGGAAAACATTAAATTGTTCCAGTTTACTTA
TTATGAATCTTGCCACTGGTCAGCCATTATATCTAGTCTAACTTACCTAA
ATTCTATTTTTAGTGTCTCCAAGTTCAAATA

CCCCCCGGCATGAAGNGAGAGCCTGGNGGCGCCTGGCTTCCCCACCCGNN
GAACNANAGAAGGTTTTCCCCAGGGGCCAAGANCNCNGGCNCNGGGNCNC
AAGACAGGAAGGATTTGTACCAACAAAGAAAGGGCCAAAAAGAAACAAAC
CNCCAGCNAAAGGGCAAAAAGGGAGGNCAACCGNANCANCAGAAGNCAGG
NCGGCCNACCGGGGCCAAANNAAGGGCCAANGAACAAAGGAGAAGCCANG
ATTTTTTGGACCCTCAGATGTGATACATTCATTTATTTATCTGAAGAAGG
AAACTGCATTGAATATGTTTTTTGTTTTNAAGCCACCNCCAACNCGCANA
AGACANCATTTTTTTTCCCCCCTCGCCAAAGACAAATATGGGTTTATATT
CTTCAAGATACCAGAACTATTTATCATATGGAACTCATTCCAAGCTTTTC
TCTAATTTTTTCTGATCAATATATCAATGCAACTCATAGTGATTAACATA
GTTTGGATCTCTTTTCTCAGCAGCAGAGTATTTCATAAAATGATTTCAGC
GCTCTACTATTACAAATTATTTGCTTATAGGACACTCATGCACCAAATGG
CAATCATATTTATCTACAACATCTCAAGTCAAAATCACTTTGGAAGACGG
ACCAATGTTATTTTTTTTTTGNACGGNCTACAAAGCAAGGTCCAGGATAG
CCAGGGTTCTGTTACACAGAGAATCCTTATG

Query= MSMg01no189_j24.b1 MSMg01no189_j24.b1 CHROMAT_FILE:
MSMg01no189_j24.b1 PHD_FILE: MSMg01no189_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:39 2005
         (686 letters)



>mm_chr3_60084846_60085931
          Length = 1086

 Score = 1253 bits (648), Expect = 0.0
 Identities = 675/684 (98%), Gaps = 2/684 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaaagaattctacagatagggatcattacccagatggacatttt-agtcacat 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 203 gaattctaaaagaattttacagatagggatcattacccagatggacatttttagtcacat 262

                                                                       
Query: 64  gtcacattatttctgcctggtctggagcagagagctttccttggtaggttttcttatcag 123
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtcacattatttctgagtggtctggagcagagagctttccttggtaggttttcttatcag 322

                                                                       
Query: 124 ataattaagaatatttatatacattcaatagaatgtaatcatagctttcctgctctttcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ataattaagaatatttatatacattcaatagaatgtaatcatagctttcctgctctttcc 382

                                                                       
Query: 184 tagaaagccagcatg-tatacagtaatctgttaaggtttatggctcctggttccagactg 242
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagaaagccagcatggtatacagtaatctgttaaggtttatggctcctggttccagactg 442

                                                                       
Query: 243 aaatgaccatccaggaaattcaggacatcactttcctaccaaaggcatgacttgggaggt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaatgaccatccaggaaattcaggacatcactttcctaccaaaggcatgacttgggaggt 502

                                                                       
Query: 303 agctgtccattgttctgactatgactgagcgctactcagtcttggttttacatggtgatg 362
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 503 agctgtccattgttctgactatgactgagtgctactcagtcttggttttacatggtgatg 562

                                                                       
Query: 363 attatgaagaagttcattctaatgacctttaagtctgtgaatatctgtaaatcaccaaac 422
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 attatgaagaagttcattctaatgacctataagtctgtgaatatctgtaaatcaccaaac 622

                                                                       
Query: 423 aagggcagcttaacattaatatcaccagagttatttttcttttactctgaatcatacatg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagggcagcttaacattaatatcaccagagttatttttcttttactctgaatcatacatg 682

                                                                       
Query: 483 atattaccaaaatatgcggggttttgtttgtttgtttgtttgattcctctagcactaaaa 542
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atattaccaaaatatgtggggttttgtttgtttgtttgtttgattcctctagcactaaaa 742

                                                                       
Query: 543 tacgtgttgatccttctgaaaacttctgctctaggaaaacattaaattgttccagtttac 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tacgtgttgatccttctgaaaacttctgctctaggaaaacattaaattgttccagtttac 802

                                                                       
Query: 603 ttattatgaatcttgccactggtcagccattatatctagtctaacttacctaaattctat 662
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 803 ttattatgaatcttgccactggtcagccattatatctagtctaacttacctaaaatctat 862

                                   
Query: 663 ttttagtgtctccaagttcaaata 686
           ||||||||||||||||||||||||
Sbjct: 863 ttttagtgtctccaagttcaaata 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)