BAC Information

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BAC

Clone NameMSMg01-190M02
Chromosome3 (Build37)
Map Location 92,823,702 - 92,823,984
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m
Downstream geneEG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190M02.T7 (MSMg01no190_m02.b1)MSMg01-190M02.TJ (MSMg01no190_m02.g1)
ACCAG380988AG380989
length702728
length of high quality
(start - end)		658 (45 - 702)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no190_m02.b1 PHD_FILE: MSMg01no190_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:08 2005CHROMAT_FILE: MSMg01no190_m02.g1 PHD_FILE: MSMg01no190_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCACTAAACCTTCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTTT
TAATGACTACTTCTATTTCTTTAGGGGTTATGGTTCTGTTTAGATGGTCT
ATCTGATCCCAATTTAACTTTGGTATTTGGTATCTGTTTAGAAAAGTGTC
CATTTTATCCAGATTTTCCATTTTGTTGAATATAGGCTTTTGTAGCAGGA
TCTGTTGAATTTTTTAATTTCCTCAGTTTCTGTTGTTATATCTCCCTTTT
CATTTCTGATTTTGTGCCCTCTGGTTAGTCTGGCTAAGGGTTTATCTATC
TTGTTGGCTTTCTCAAAGACACCAGCTCCTGGTTTTTATTGATTCTTTGT
ATAGTTCTTTTTGTTTCTACTTGGTTGATTTCAGTCCTGAGTTTCATTAT
TTCCTGCATTCTACTCCTCTTGGGTGTATTTGCTTCTTTTTCTTCTAGAT
CTTTCAAATGTGCTGTTAGGCTGCTAGTGTATGCTCTCTCTAGTTTCTTT
TTGGAGGCACTCAGAGCTATGAGCTTTCCTTCTAGCACCGCTTTCATTGT
GTCCCTTAAGTTTGGGTATGTTGTGCCTTCATTTCCATTAAATTCTAAAG
TCTTTATTTCTTCCTTGACCAAGTTATCACGCAATAGGGCATTTTTGCTC
TC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGAAGTTGCCAGAAGTGGGAC
TTCAGCTATAACAACCATCCCAAAGGGGAAGGCCGAGAGATTCTTTTCTA
TAGATGACCTAAGGTAGACTTTTCTTCCAATGCTGGGGAAGGGGGTTGGG
GGATTGTTCAAGAAGCTTTTATGCACCTATGATGGAAGACAAAACGTATT
TTCCCTACAAAGAATGCTCCCTGGGTAGATTAAATCCCCTGGGAAGTCAC
CAACATTGTTTGAGCTGGGAGAGCTGTCAGTAAGTAAACAGTTCATAATG
AAAGGTACTTTTTTTTTACCCCCCCCCCCCCCAGAGCAGCAGAGTCTGGG
GTCCATTCTTGGGTGAATGGGCTGAAAAGAAAAACACCATGGCGGGGCGT
AACCCACATTCCAGGACCAGTTTCCAGCTTTGTTCTCTCCATCCTAGCAT
TCTCAAGCACCTTGCTTAATTGTCTCTGTAAAATCGGACTAATAACCATC
CCTAGCTCCCTAGGTAAGGCCCATACCCATTAAGATTTTCAGAGCAGTAT
TTTGTCGTCGTGATCTTACATTGTATTCGTCTTTAACTAATCTGTCATTT
TTTGGGCTCACGGCGGCCCCAAATGCCTACCCATCAATTGCCCAACAAAT
CCTTTAGCGTTTTTTACAGCACCACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_m02.g1 MSMg01no190_m02.g1 CHROMAT_FILE:
MSMg01no190_m02.g1 PHD_FILE: MSMg01no190_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:08 2005
         (281 letters)



>mm_chr3_92823502_92824184
          Length = 683

 Score =  513 bits (265), Expect = e-150
 Identities = 278/283 (98%), Gaps = 2/283 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgaagttgccagaagtgggacttcagctataacaaccatcccaaaggggaaggccga 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgaagttgccagaagtggaacttcagctataacaaccatcccaaaggggaaggccga 260

                                                                       
Query: 61  gagattcttttctatagatgacctaaggtaga--cttttcttccaatgctggggaagggg 118
           ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||
Sbjct: 261 gagattcttttctatagatgatctaaggtagagacttttcttccaatgctggggaagggg 320

                                                                       
Query: 119 gttgggggattgttcaagaagcttttatgcacctatgatggaagacaaaacgtattttcc 178
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgagggattgttcaagaagcttttatgcacctatgatggaagacaaaacgtattttcc 380

                                                                       
Query: 179 ctacaaagaatgctccctgggtagattaaatcccctgggaagtcaccaacattgtttgag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacaaagaatgctccctgggtagattaaatcccctgggaagtcaccaacattgtttgag 440

                                                      
Query: 239 ctgggagagctgtcagtaagtaaacagttcataatgaaaggta 281
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgggagagctgtcagtaagtaaacagttcataatgaaaggta 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 683
Length adjustment: 9
Effective length of query: 272
Effective length of database: 674
Effective search space:   183328
Effective search space used:   183328
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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