BAC Information

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BAC

Clone NameMSMg01-191I19
Chromosome3 (Build37)
Map Location 142,789,970 - 142,790,286
singlet/doubletsinglet
Overlap genenone
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191I19.T7 (MSMg01no191_i19.b1)MSMg01-191I19.TJ (MSMg01no191_i19.g1)
ACCAG381524AG381525
length708682
length of high quality
(start - end)
320 (23 - 342)---
definitionCHROMAT_FILE: MSMg01no191_i19.b1 PHD_FILE: MSMg01no191_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:12 2005CHROMAT_FILE: MSMg01no191_i19.g1 PHD_FILE: MSMg01no191_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTCAACAATAAAAACTA
TATATAAAACCAACATTTAAAATCATACTCAATAGTGAGTGATTAAAACT
TTTTATTTGACATCAGAAACAATGACATCAGAAACCTTCATTTACCACTT
CTATTCAACACAGAACTGAAGGTTCAAACCCGAGAAAGTAGGCAATGTGA
AATATAAAAGGCATGATTATAATAACCTTAAAAGTAGAAAACACTAAATA
CTACATAATAAGGCCATTAAACTGGTAAATTAATTACGGAAGGTAGTAGG
ATGGGTCTGGAGAGGTGATTGAGCAATTAGAAGTACACGTTGTTCTTCTC
CACCCACCGCCCCCCCTTCCTAACAGTGTCAGGCTGTTCAGAGAATCTGG
TAATTCCAAAAAACAAAGAATCTTGCCGTCGGGATCATCTGTACTCACAC
CCATACCCACACAGAGACTTAAATAAAACAACAACAAATCTTTGAAAAAT
ATCAGGATGCAAACGGCTAAATCCAACAATCAGTAGATCCCTGTCTCTTA
CCAATGAACAATCTGAAAATAAAATCAATGCTCCATTTGCATTATCATGA
ATGAGAATAAAACACTCCACCGACATATGTGTAATATTCGGGTTGGAGAA
TCTAATGTTCTTGGTAATCTCCTTGCCCCCGGTTAAAAAAGCTTGATGCT
ACCTACAG
TGGCGGCCGCCTGTCCCAAAAAGGGAGGNGAACNANAGAATTACCCAAAA
AAGCGCACCNGAGGAAACCGAAGGGNAGAGAAGCACCGGAAATTTTTGCC
ACAAAAAAGAGGCANNAGGGAAAGGNAAANCAAAANAACCCNAAGAANCC
ACCTCACACCAGNCAGAAGGGCNAAGAACAAAAANNCAGGGGACAACAGA
GGCGGGCAAGGAGGNGGAGAAAGAGGAACACTCCTCCANGGNNGGNGGGA
NGGCAGGCNGGNACAACCACNCGGGAAANCCGNCGGGCGGNNCCTTTTTT
TTTTGGACANAGNACNACCGGAGGANCCAGCAATATTTTTTTTTTCCCCC
CCCCCCCCGANGNNNNAANGGGNAAGAAGGANANAGGGNNNANAAAAAAA
NNAAAAGAAAAAGGGGGGGGGGGGGGAAGNNGGAAAGAANCNAGAGGNCC
CNCAACAGAGGAAGGGANACAGAAAAGGGGGNACANCNACACAAGGGAGA
ACAACNCAGCCACGAAAAAGAACGCAAGCAGGAAANCCCCAGCCAAACGG
ACGGACCGGGAGGGCANCACCCGGAGCGAGGAAACACACCCACAAAGGAA
CGCACACAAGAGGGACACACAGAAAAGCGGATTTTATCTTCAAACCGAGG
AAACCCAAGAGATACGAAACAATTTCCTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_i19.b1 MSMg01no191_i19.b1 CHROMAT_FILE:
MSMg01no191_i19.b1 PHD_FILE: MSMg01no191_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:12 2005
         (320 letters)



>mm_chr3_142789578_142790297
          Length = 720

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttcaacaataaaaactatatataaaaccaacatttaaaatcatactcaatag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggaattctttcaacaataaaaactatatataaaaccaacatttaaaatcatactcaatag 650

                                                                       
Query: 64  tgagtgattaaaactttttatttgacatcagaaacaatgacatcagaaaccttcatttac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgagtgattaaaactttttatttgacatcagaaacaatgacatcagaaaccttcatttac 590

                                                                       
Query: 124 cacttctattcaacacagaactgaaggttcaaacccgagaaagtaggcaatgtgaaatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cacttctattcaacacagaactgaaggttcaaacccgagaaagtaggcaatgtgaaatat 530

                                                                       
Query: 184 aaaaggcatgattataataaccttaaaagtagaaaacactaaatactacataataaggcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaaaggcatgattataataaccttaaaagtagaaaacactaaatactacataataaggcc 470

                                                                       
Query: 244 attaaactggtaaattaattacggaaggtagtaggatgggtctggagaggtgattgagca 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 469 attaaactggtaaattaattacggaaggtagtaggatggggctggagaggtgattgagca 410

                            
Query: 304 attagaagtacacgttg 320
           |||||||||||||||||
Sbjct: 409 attagaagtacacgttg 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)