Query= MSMg01no193_f08.b1 MSMg01no193_f08.b1 CHROMAT_FILE:
MSMg01no193_f08.b1 PHD_FILE: MSMg01no193_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:42 2005
(598 letters)
>mm_chr3_130090470_130091467
Length = 998
Score = 1093 bits (565), Expect = 0.0
Identities = 582/588 (98%)
Strand = Plus / Plus
Query: 11 ctggccaagtgttgaagtagtagaaccccagcttgtcctgctgtgggcagaatttaggac 70
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 211 ctggccaagtgttgaagtagtagaaccccagcttgtcctgctgtggacagaatttaggac 270
Query: 71 atctcattttcccttgccctttcaaaatagatggcaaagtcaaaggaattgtgaaaattc 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atctcattttcccttgccctttcaaaatagatggcaaagtcaaaggaattgtgaaaattc 330
Query: 131 accaactggggaggatggttgctgagtgcttagtgttctcaagggctgtccatcagcctc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 accaactggggaggatggttgctgagtgcttagtgttctcaagggctgtccatcagcctc 390
Query: 191 tctgcatgtagatggctggaaacttgggtgggtatcccttcataaaggacagagttcaca 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tctgcatgtagatggctggaaacttgggtgggtatcccttcataaaggacagagttcaca 450
Query: 251 atagaggcttttctcatgtcctttaaaaacagagtgtttaggttagcatgtggggtaatc 310
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atagaggcttttctcatgttctttaaaaacagagtgtttaggttagcatgtggggtaatc 510
Query: 311 gggctcattatcacatctttatgcatatgtgtttaggatcattattcacatttgcccccc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gggctcattatcacatctttatgcatatgtgtttaggatcattattcacatttgcccccc 570
Query: 371 acccccgactacctgccccaccctgccccgtgcttcctcctccaactggtcccctctctc 430
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 571 acccccgactacctgccccaccctgccccgtgcttcctcctccaattggtcccctctctc 630
Query: 431 cccacccccaagaagttttgagagaaaagaaatgacaaaatattgttgccagataatcac 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cccacccccaagaagttttgagagaaaagaaatgacaaaatattgttgccagataatcac 690
Query: 491 caaaatgatcttttgtcanaagaaagaaattaaggaggaagaagaaacatgtgtgcttat 550
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 691 caaaatgatcttttgtcaaaagaaagaaattaagaaggaagaagaaacatgtgtgcttat 750
Query: 551 gtgaagtcctatagagataaacccacctccccactgcctggttacata 598
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gtaaagtcctatagagataaacccacctccccactgcctggttacata 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_f08.g1 MSMg01no193_f08.g1 CHROMAT_FILE:
MSMg01no193_f08.g1 PHD_FILE: MSMg01no193_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:42 2005
(667 letters)
>mm_chr3_130142829_130143894
Length = 1066
Score = 1013 bits (524), Expect = 0.0
Identities = 548/562 (97%), Gaps = 11/562 (1%)
Strand = Plus / Minus
Query: 116 tcggtgtgaaaactggctgaaatctgcatgaaaggctgtctgggtttgtcaaagtagttc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 tcggtgtgaaaactggctgaaatctgcatgaaaggctgtctgggtttgtcaaagtagttc 1007
Query: 176 gtgaactttggccaaactttctcggctcctggtccaagtcttagtttgtaatgcaacgtg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gtgaactttggccaaactttctcggctcctggtccaagtcttagtttgtaatgcaacgtg 947
Query: 236 aaaccacgtggatttcagatggtgtcaggtttcaccttggaaatttggcctagctttcta 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 aaaccacgtggatttcagatggtgtcaggtttcaccttggaaatttggcctagctttcta 887
Query: 296 atcaatcatc----------accgttagtaacgatgaaagccaacacacctttctgggaa 345
|||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 atcaatcatcaccgttagtaaccgttagtaacgatgaaagccaacacacctttctgggaa 827
Query: 346 aaaacacggaggactggctgatgacaggctaggctgggaacctgcccctgcacttccgct 405
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 826 aaaacactgaggactggctgatgacaggctaggctgggaacc-gcccctgcacttccgct 768
Query: 406 gccaaaagaatactcctcagaaaagaacggggactctccagcttacctggaggggccagg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 gccaaaagaatactcctcagaaaagaacggggactctccagcttacctggaggggccagg 708
Query: 466 ctgaggaattgtgagactgggtgtagaaagacattatactccatgcaggagacacgccat 525
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 707 ctgaggaattgtgagactgggtgtagaaagacatgatactccatgcaggagacacgccat 648
Query: 526 gtgaaatgtcaccaccacccacggatcaaggggttctcagcccgtcattaaaggctccac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gtgaaatgtcaccaccacccacggatcaaggggttctcagcccgtcattaaaggctccac 588
Query: 586 gttccattccattcccacccatgacagtagctatcacgatgctcaatcttctgcaccagt 645
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 587 gttccattccattcccacccatgacagtagctatcacgatgctcaatctcctgcaccagt 528
Query: 646 gatgagcttttagcttggaggc 667
||||||||||||||||||||||
Sbjct: 527 gatgagcttttagcttggaggc 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
