BAC Information

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BAC

Clone NameMSMg01-193H11
Chromosome3 (Build37)
Map Location 9,716,272 - 9,716,579
singlet/doubletsinglet
Overlap genePag1
Upstream geneLOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10, Zfp704
Downstream geneLOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193H11.T7 (MSMg01no193_h11.b1)MSMg01-193H11.TJ (MSMg01no193_h11.g1)
ACCAG382759AG382760
length742699
length of high quality
(start - end)
311 (46 - 356)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no193_h11.b1 PHD_FILE: MSMg01no193_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:54 2005CHROMAT_FILE: MSMg01no193_h11.g1 PHD_FILE: MSMg01no193_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAAGGCAGTCTTTGCATGTTCACAGGGTGGAAAGGCCCACCGCC
CACGTGTGTGCAGCCTCCCAGCAGGGTCAGCTGCCCTCTGGGGATGGGCT
AGCTTCCAAGGACAGGAGATGTCAGCATAGATGGGAAGAAAAAGTGCTTC
TGTTTTATATTTAAGACCAGAGATTAAAAATGTAACAGCATCTTAAGTGG
GGGTGGCAGGAGTTCTGAAGATCTCAGGGAAGCATGTGTTACTGGTCGCC
AGTCACATCACCTGGGGAAGAAAATGGAGGCCAGGGTGGGGCGGGGGGTG
GGGTTTTTTTTTTCTCCCCCCCCCCCCCCCCGNGTGGGGTTTTTTTTTTT
CTTTTTTTTTTTGCTTCCCCCCCCCCCAAAAAAATATCTTTCTGTTGTGG
TCCCGTTCCCTCTTTTCTCTCTTCCCCCTTTCTTTTCCCCTTTTCCCTTT
TTCCCCTTTTTCTTTTTATATTCCCTCCCCGTTTTCCCTCTTCCCTCCCT
TCCCTCTTTTTTTTCCCCCCTCCTCCCCCCTTCTTTCCCTTATCTCTTTT
CCTTCCATCTCCCTCTTACCCCCCTTTTCCCTCTTTTTTCTTTTCCCCCC
CTCTCTCTCATTTTTTCCCCCCCTGTCCTCTTTTTTTTCTACTTCCCTTT
TCCCCTCCTTTTCCCCGCGTTTTTCCGACCTTCCATCATCTT
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTCTTCTGAAAAAACAGTAAGTG
CTTTTAACTTCTTTTGTTTCTTCTTTTTTTTTATTGGATATTTTCTTTAT
TTACATTTCAAATATTATCCCCTTTCCCAGTTTCCCCCACTCTGGAAACC
CCTTATCCCATCCCCCCCCACCGCCTACTTCTATGAGGGTGTTCCCCCCA
CCCACCCACTCTTACCTCCCTACCTTCACATTCTCCTACATTGGGGACCA
AGGGCCTCTCCTCCCATTGATTGCTGACAAGGGCACCCTCTGCTACATAT
ATGACTATTTTTTTCGCCCCCACCCCCCGCGTACTTCTTGGTTGGTGGTT
TAGTGCCTGTTAGCCCCCCCCAACAAAAAAATAGACCTAGCGGCAGATAC
TGAGGATATTCCCACATCCTTCAGATCCTACTACAAAAGCCTCTACTCTC
CAAAACTATATATACTACACGACACACGCCATTTTTCTAGTTCAACCCGA
CGTACTAAATTCACATCTCCATAATACTACTTATTCTACCGTATTCGACA
CCGCACCTATAATCCTTTCCTTTACAATTTCTTCCATCTCAATCTTACCT
GTCTTATATCTTTTGGTGCCTTTAATCTACCATTATTTCTTTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_h11.b1 MSMg01no193_h11.b1 CHROMAT_FILE:
MSMg01no193_h11.b1 PHD_FILE: MSMg01no193_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:54 2005
         (311 letters)



>mm_chr3_9716068_9716778
          Length = 711

 Score =  557 bits (288), Expect = e-163
 Identities = 302/308 (98%), Gaps = 3/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaggcagtctttgcatgttcacagggtggaaaggcccaccgcccacgtgtgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaggcagtctttgcatgttcacagggtggaaaggcccaccgcccacgtgtgt 264

                                                                       
Query: 65  gcagcctcccagcagggtcagctgccctctggggatgggctagcttccaaggacaggaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 gcagcctcccagcagggtcagctgccctctggggatgggctagcttccaaggacaggagg 324

                                                                       
Query: 125 tgtcagcatagatgggaagaaaaagtgcttctgttttatatttaagaccagagattaaaa 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtcagcatagatgggaagaaaacgtgcttctgttttatatttaagaccagagattaaaa 384

                                                                       
Query: 185 atgtaacagcatcttaagtgggggtggcaggagttctgaagatctcagggaagcatgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtaacagcatcttaagtgggggtggcaggagttctgaagatctcagggaagcatgtgt 444

                                                                       
Query: 245 tactggtcgccagtcacatcacctggggaagaaaatggaggccagggtggggcgggg--- 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   
Sbjct: 445 tactggtcgccagtcacatcacctggggaagaaaatggaggccagggtggggtggggtgg 504

                   
Query: 302 ggtggggt 309
           ||||||||
Sbjct: 505 ggtggggt 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)