Query= MSMg01no193_o12.b1 MSMg01no193_o12.b1 CHROMAT_FILE:
MSMg01no193_o12.b1 PHD_FILE: MSMg01no193_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:36 2005
(683 letters)
>mm_chr3_122275679_122276761
Length = 1083
Score = 1230 bits (636), Expect = 0.0
Identities = 677/708 (95%), Gaps = 28/708 (3%)
Strand = Plus / Plus
Query: 4 ggaattccagattgtgccaagctgacaactgaaattaaacatcaccattttctcctcccc 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ggaattccagattgtgttaagctgacaactgaaattaaacatcaccattttctcctcccc 235
Query: 64 tccccccgacacacacaatttttaagcaactgtacaggttcaagcacattttattaaata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tccccccgacacacacaatttttaagcaactgtacaggttcaagcacattttattaaata 295
Query: 124 ttactgatctagactggcgaaatatagatgtttctgaacagtattacatgaagagattac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttactgatctagactggcgaaatatagatgtttctgaacagtattacatgaagagattac 355
Query: 184 atagctcttaaaacagctttttgtaaagaaaggctaaaatttccaattctctgactattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atagctcttaaaacagctttttgtaaagaaaggctaaaatttccaattctctgactattt 415
Query: 244 gtgtaaagagctaaataaaaattaggaaactggaaagccctgaggggaattctaagtaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtgtaaagagctaaataaaaattaggaaactggaaagccctgaggggaattctaagtaca 475
Query: 304 atgagcaaaga-------------aggaaattcatgaagaactctaagtgggctctatgt 350
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 476 atgagcaaagagtaagaagcaagaaggaaattcatgaagaactctaagtgggctctatgt 535
Query: 351 agatggcacaccaaaaatgaaccacacaatgtttggcactagggtagaaaggataaaaag 410
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 536 agatggcacaccaaaaatgaaccagacaatgtttggcactagggtagaaaggataaaaag 595
Query: 411 gaacacagaaaacaaaacaaaacaaaacaaa---------------ccctagtcatatta 455
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 596 gaacacagaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaccctagtcatatta 655
Query: 456 atgaccactaatactcttaaccacggttaagcgccagaaacataaccaaaactcactgta 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atgaccactaatactcttaaccacggttaagcgccagaaacataaccaaaactcactgta 715
Query: 516 gcacctagattaatttcacaattcacctaagtaccagcaaagatgctaagtgctaatcat 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gcacctagattaatttcacaattcacctaagtaccagcaaagatgctaagtgctaatcat 775
Query: 576 tatttcagggttagaggtgatggaagagtcctaactatcaacctagtagttatgcaaacc 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tatttcagggttagaggtgatggaagagtcctaactatcaacctagtagttatgcaaacc 835
Query: 636 tacagtcattctgaaagggaacccaaaaggggaagatatgaggaagag 683
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tacagtcattctgaaagggaacccaaaaggggaagatatgaggaagag 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_o12.g1 MSMg01no193_o12.g1 CHROMAT_FILE:
MSMg01no193_o12.g1 PHD_FILE: MSMg01no193_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:36 2005
(650 letters)
>mm_chr3_122391099_122392144
Length = 1046
Score = 1154 bits (597), Expect = 0.0
Identities = 636/651 (97%), Gaps = 6/651 (0%)
Strand = Plus / Minus
Query: 1 agcattttctgctgaagtagggcagacatggaatgtctgctgcgtatgtctacaggctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 agcattttctgctgaagtagggcagacatggaatgtctgctgcgtatgtctacaggctat 787
Query: 61 atgtagtctagttacatgaggagtttaggaatctccttggagactcattatcttaaaata 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atgtagtctatttacatgaggagtttaggaatctccttggagactcattatcttaaaata 727
Query: 121 aagagactaatgtgcaacagatcaatccctatgacaaaatcttcattattggggtgggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 aagagactaatgtgcaacagatcaatccctatgacaaaatcttcattattggggtgggca 667
Query: 181 ttcaaatttgattactgtgaggatgagagagatattctgtgtcttcagcttgccaatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ttcaaatttgattactgtgaggatgagagagatattctgtgtcttcagcttgccaatctt 607
Query: 241 tattttagtaataaactctttggtagatagtttagagctagaggctgtttctgtcctgct 300
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct: 606 tattttagtaataaactctttggtagatagtttagagctagaggcaggttctgtcctgtt 547
Query: 301 ctacaagttggggttaccgggtcaattttgtgcagtcaacggaccagacagactgatact 360
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 546 ctacaagttggggtcaccgggtcaattttgtgcagtcaacggagcagacagactgatact 487
Query: 361 tataaataagcaaattttcagttcctcccctttgattttatataatatctttcaataaac 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tataaataagcaaattttcaattcctcccctttgattttatataatatctttcaataaac 427
Query: 421 tcagaaaacatcagaagctcacagtctgtctgtgacaagggctaaggatctgaggaggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcagaaaacatcagaagctcacagtctgtctgtgacaagggctaaggatctgaggaggag 367
Query: 481 cttgaccagccattcttttctctgatcagctatagtctcatggggg-tactaactgcaaa 539
||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct: 366 cttgaccagccat-cttttctctgatcagctatagtctcatggggggtgctaactggaaa 308
Query: 540 catatgtagtaaaatccacactagtaataaaatcccaagactgcttgtgagatcctgtaa 599
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 catatgtagta----ccacactagtaataaaatcccaagactgcttgtgagatcctgtaa 252
Query: 600 cagggagaaatgtaacctaatattaaagagtgcctcttaaagtgagattta 650
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cagggagaaatgtaacctaatattaaagagtgcctcttaaagtgagattta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1046
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1036
Effective search space: 663040
Effective search space used: 663040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
