Query= MSMg01no193_o14.b1 MSMg01no193_o14.b1 CHROMAT_FILE:
MSMg01no193_o14.b1 PHD_FILE: MSMg01no193_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:37 2005
(591 letters)
>mm_chr3_154090016_154091006
Length = 991
Score = 1091 bits (564), Expect = 0.0
Identities = 581/587 (98%)
Strand = Plus / Minus
Query: 5 gaattctcttcagtctgcctttaagtttaactgtcgcctttgaaaaagggcctcaatgac 64
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 791 gaattctcttcagtctggctttaagtttaactgtcgcctttgaaaaggggcctcaatgac 732
Query: 65 catctacaatacttgccagcagggcctgtggaggtaaagatttccatataccacatgtgc 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 731 catctacaatacttgccagcagggcctgtggaggtaaagatttccatacaccacatgtgc 672
Query: 125 tctaagcacaaaattacaataattagagatggcaaagtctgagcagcctatctccaggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tctaagcacaaaattacaataattagagatggcaaagtctgagcagcctatctccaggaa 612
Query: 185 ggttggaggaagattgtgacagtgtttagtctaggcctgccccgttctcttaatgccaca 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 611 ggttggaggaagattgtgacagtgtttagtctaggcctgccccattctcttaatgccaca 552
Query: 245 cagaacgaacaaaccgtgcatgattcctcccatcaaggaatccgagacacaatcagatgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cagaacgaacaaaccgtgcatgattcctcccatcaaggaatccgagacacaatcagatgt 492
Query: 305 cttcttggcaaatttgttcaatgtcgcgacccattccactcaatatgtcctgatcatatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cttcttggcaaatttgttcaatgtcgcgacccattccactcaatatgtcctgatcatatt 432
Query: 365 ccactcagctcttccctctgaagcacttagaaatgtgagtgtgtgaaggaaacactgacc 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ccactcagttcttccctctgaagcacttagaaatgtgagtgtgtgaaggaaacactgacc 372
Query: 425 atagactcaacatagactcaacagatattctgagaatcttgtaaaaaaaaaggcaatgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atagactcaacatagactcaacagatattctgagaatcttgtaaaaaaaaaggcaatgtt 312
Query: 485 agcattgtggacttcgttaaaaacacagtttaaaaacaaaacaaaaactgacccaccctc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agcattgtggacttcgttaaaaacacagtttaaaaacaaaacaaaaactgacccaccctc 252
Query: 545 tgaatgactganaacacaaagacttctctacttccacacttaattca 591
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 251 tgaatgactgaaaacacaaagacttctctacttccacacttaattca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_o14.g1 MSMg01no193_o14.g1 CHROMAT_FILE:
MSMg01no193_o14.g1 PHD_FILE: MSMg01no193_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:37 2005
(636 letters)
>mm_chr3_153979474_153980509
Length = 1036
Score = 1108 bits (573), Expect = 0.0
Identities = 621/649 (95%), Gaps = 20/649 (3%)
Strand = Plus / Plus
Query: 1 tctgcatctcttggtttacctacgggttctcacctgtatgacacgtctgcttaagcctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcatctcttggtttacctacgggttctcacctgtatgacacgtctgcttaagcctgt 260
Query: 61 cctttctgccagtttctggagggtctgtgcatctgggttgttgtcctgagcgaactgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttctgccagtttctggagggtctgtgcatctgggttgttgtcctgagcgaactgtgc 320
Query: 121 ttgcataacctgtggttgtttttaaagacagatgtcgggagcaaacagttaaaagtttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttgcataacctgtggttgtttttaaagacagatgtcgggagcaaacagttaaaagcttga 380
Query: 181 tcttttgcattctgatggcagaacagattaaggcacacaaagaaaaacgtgttgtgtatt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttttgcattctgatggtagaacagattaaggcacacaaagaaaaacgtgttgtgtatt 440
Query: 241 ttggtatttgaaaatgaatacagcgaacacaagtaaaagaaaggcgtgctttgtaaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtatttgaaaatgaatacagcgaacacaagtaaaagaaaggcgtgctttgtaaattt 500
Query: 301 acattaactcttattctaagatctttaaaaattaaccccctggaaactctgcccctcagc 360
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 acatgaactcttattctaagatctttaaaaattaaccgcctggaaactctgcccctcagc 560
Query: 361 tctgccattagagacactaccctctctccacccagtctcagaactcccaaaacacacagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgccattagagacactaccctctctccacccagtctcagaactcccaaaacacacagg 620
Query: 421 agctgactctcccacccttggcttcccatttgtaaaatatccctgcactgggactcaacg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctgactctcccacccttggcttcccatttgtaaaatatccctgcactgggactcaaca 680
Query: 481 aaagactcaagtcccgccatagttatctctagcctctgtgggtctcaacagcctcaaggg 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagactcaagtcccaccatagttatctctagcctctgtgggtctcaacagcctcaaggg 740
Query: 541 ctcttacatcgttttttttt---------------gttgttgttgatctacaaacagtac 585
||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 741 ctcttacattgttttttttttttttttttttttttgttgttgttgatctacaaacagt-- 798
Query: 586 tctgctgcagagatggattacagcatactgcaatgatgccactgctgtg 634
|||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 799 ---gctgcagagatggattacagcatagtgcaatgatgccactgctgtg 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
