Query= MSMg01no194_b10.b1 MSMg01no194_b10.b1 CHROMAT_FILE:
MSMg01no194_b10.b1 PHD_FILE: MSMg01no194_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:52 2005
(572 letters)
>mm_chr3_89827002_89827972
Length = 971
Score = 1071 bits (554), Expect = 0.0
Identities = 563/566 (99%), Gaps = 1/566 (0%)
Strand = Plus / Plus
Query: 7 gaattctctcaaaatcccaggttaataaagaaagagaactaaagttaatttcaattgtat 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctctcaaaatcccaggttaataaagaaagagaactaaagttaatttcaattgtat 266
Query: 67 acagcctcagattatccagtccttccctatcttctagacaataaatctctcctgtgtcaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 acagcctcagattatccagtccttccctatcttctagacaataaatctctcctgtgtcaa 326
Query: 127 agatttaagtcacccatcaacttaccatactgcaccagtgatggtgattgtgttgttgag 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agatttaagtcacccatcaacttaccatactgcaccagtgatggtgattgtgttgttgag 386
Query: 187 cccatatcccaagaggaggtggtagtgcttccagattgagaatgttgagctgccagttga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cccatatcccaagaggaggtggtagtgcttccagattgagaatgttgagctgccagttga 446
Query: 247 gcaagggcctgcgcagtcttgaattgctccaagaactgggagcctgttgtactgccacct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcaagggcctgcgcagtcttgaattgctccaagaactgggagcctgttgtactgccacct 506
Query: 307 ttagcttccccaacatcaccaaatcctttccccaacatgctcacctacagatcaacaaag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttagcttccccaacatcaccaaatcctttccccaacatgctcacctacagatcaacaaag 566
Query: 367 agatcagagaaccttacagctggtaatcttcctcagcttactcacaaagacagaccaaaa 426
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agatcagagaagtttacagctggtaatcttcctcagcttactcacaaagacagaccaaaa 626
Query: 427 gtcaatgcataataatgctactcatagaatgctaccaagcaaagaatagcaaaaagtttt 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtcaatgcataataatgctactcatagaatgctaccaagcaaagaatagcaaaaagttt- 685
Query: 487 aaggccagccttataccagaccaactatactgcattattatgagcacaatctagagtctc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaggccagccttataccagaccaactatactgcattattatgagcacaatctagagtctc 745
Query: 547 aatacctatattcaaatcctgagtgc 572
||||||||||||||||||||||||||
Sbjct: 746 aatacctatattcaaatcctgagtgc 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space: 540082
Effective search space used: 540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_b10.g1 MSMg01no194_b10.g1 CHROMAT_FILE:
MSMg01no194_b10.g1 PHD_FILE: MSMg01no194_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:52 2005
(287 letters)
>mm_chr3_89910518_89911204
Length = 687
Score = 514 bits (266), Expect = e-150
Identities = 278/282 (98%), Gaps = 2/282 (0%)
Strand = Plus / Minus
Query: 1 taggaaagtcatggctacatagtgagactctgtgtcaaggaacaatggccacagaaacca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 523 taggaaagtcatggctacatagtgagactctgtgtcaaggaacaatggccacaggaacca 464
Query: 61 atgagtcaaattccataacatacccacttctcgagcaagaatgatgctgctgaggcgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atgagtcaaattccataacatacccacttctcgagcaagaatgatgctgctgaggcgtat 404
Query: 121 cggttgggtggattcagcaacaagaacagcct-tttgggagcacgaggtaccattttcat 179
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 403 cggttgggtggattcagcaacaagaacag-ctctttgggagcacgaggtaccattttcat 345
Query: 180 ataaaggctgaatggtaactgcatcatgatgagtggaatgcctgccaagacaacatggtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ataaaggctgaatggtaactgcatcatgatgagtggaatgcctgccaagacaacatggtt 285
Query: 240 tagagcatgaaataaatacacggttcaggcaacacaggcaag 281
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 284 tagagcatgaaataaatacatggttcaggcaacacaggcaag 243
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
