BAC Information

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BAC

Clone NameMSMg01-194B13
Chromosome3 (Build37)
Map Location 122,943,067 - 122,943,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2
Downstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3, LOC100043333
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194B13.T7 (MSMg01no194_b13.b1)MSMg01-194B13.TJ (MSMg01no194_b13.g1)
ACCAG383145AG383146
length736789
length of high quality
(start - end)
529 (72 - 600)261 (77 - 337)
definitionCHROMAT_FILE: MSMg01no194_b13.b1 PHD_FILE: MSMg01no194_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:53 2005CHROMAT_FILE: MSMg01no194_b13.g1 PHD_FILE: MSMg01no194_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACAGGATTCCGATAAGGGTGAAGCCCCACCTTACTTCCAGGGCA
CCCCCTAAGGCCTAGGAAGAAAAGCCAATATATGTTTGCATGGTTGTACA
GCCTTGTAAAATTGCCAAGGTAAAGACACTTACATGGATCTGATTGTAAC
TCGTTCCAATTTCTCCACTAATGTCATACTGAAGCGGCAAGGATGTGACT
GGAATTGAGCTAAGAGGGACATGATGGGGATTGGTTAACTCTATGTGGCT
GACAACCACATTCATGTAAAGTCATCGCTAGCTGTCCAGGGAAAGAATGG
TGGCTCCCAGGAACGATCTTCCCATACGTTGTATCAACTCACTTGATGTA
GGAATATTACCAGCCCAGGCAAGTGGCATCAATGTGCATCGCCCATTTGA
CCCTGAGTACCTAGGAGGTGGAGAAGAGAACTAGGCATTGGTATATGAGC
AGACTCTGGCCTGTGGAAATCTTCACTTTCCAAACAAAAAAACATCATGG
AAAGACTTGGTTGTTTTGTTTGTTTGTTTGTTGTTTGTTTTACAAAGATG
TGTCAGATACACAGTTCTTATGACCTTAAGGTCACAAACCTGCAGGCACG
TTTATAGCAATTGCTTCTACACAAGGATTCACATTTTGGGTGCAACGAAA
TTATCAGATATGGAACACTGATTCTCTTTACCTCTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTCCTCACCCACATGGTGCC
TGACAACCATCTGTGACTCCAGTTCCAGGGGATCCGAGGCCGCCTGCTGA
CCTCTGAGGGCAAAGCACTGATACCCACAAAATAAACAAGTCACAATGTT
AATATAAACATATCTGAGGGGATTAAAGCACACTTAAGGTGCAGTAATTT
AATATGTATACATAAATGTATATGTAAAATATAAAATATATAAACAAGAA
TATGTATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCAACCCACAAA
AAAAAAAAAATTTTAAATTTTTCCCCAACCANNNCCCCCTTTTTTTTTTT
TTTTTTTATTTTTGGCTTTTTTTCCCCTTAAAAAAAAAAAAAAAATATTG
GGGCGGGGGGTGCATTTAATAATCTTTATCCGTCTTATTTTTTAACTTTT
ATTTCTCCTTTTTACCTCCATATTCCGCTTTGTCATAACACGTCCGTCTC
CTATCTATTCTTCTCTTTCTCACACTTCTTCTTACACTTTTTTGACATTT
ATACAACCTTTATCAACTTCTTTTTATACCTTTTAATATCCAATCATTTC
CATTACATATATCAATTTATATCCTCATTTCTTCCTTTTATCCCACCCCC
TTTCTATTTTTCCTTTTTTTTCTTCACTATCCTATCCTCTTTTATATATC
ACTTATTTCTAATACTCTTCCACCTTCTATTCCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_b13.b1 MSMg01no194_b13.b1 CHROMAT_FILE:
MSMg01no194_b13.b1 PHD_FILE: MSMg01no194_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:53 2005
         (529 letters)



>mm_chr3_122942871_122943798
          Length = 928

 Score =  922 bits (477), Expect = 0.0
 Identities = 516/533 (96%), Gaps = 9/533 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtgaagccccac----cttacttccagggcaccccctaaggcctaggaagaaaagcca 56
           ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gggtgaagccccacagaccttacttccagggcaccccctaaggcctaggaagaaaagcca 256

                                                                       
Query: 57  atatatgtttgcatggttgtacagccttgtaaaattgccaaggtaaagacacttacatgg 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atatatgtttgcatggttgtacagccttgtaaaattgccaaggtaaagacacttacatgg 316

                                                                       
Query: 117 atctgattgtaactcgttccaatttctccactaatgtcatactgaagcggcaaggatgtg 176
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 317 atctgattgtaactcgttccaatttctccactaatgtcatagtgaagcggcaaggatgtg 376

                                                                       
Query: 177 actggaattgagctaagagggacatgatggggattggttaactctatgtggctgacaacc 236
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 377 actggaattgagctaagagggatatgatggggattggttaactctatgtggctgacaacc 436

                                                                       
Query: 237 acattcatgtaaagtcatcgctagctgtccagggaaagaatggtggctcccaggaacgat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acattcatgtaaagtcatcgctagctgtccagggaaagaatggtggctcccaggaacgat 496

                                                                       
Query: 297 cttcccatacgttgtatcaactcacttgatgtaggaatattaccagcccaggcaagtggc 356
           |||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 497 cttcccatacgttgtaccaactcacttgatgtgggaaaattaccagcccaggcaagtggc 556

                                                                       
Query: 357 atcaatgtgcatcgcccatttgaccctgagtacctaggaggtggagaagagaactaggca 416
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 557 atcaatgtgcatcgcccatttgaccctgagtacccaggcggtggagaagagaactaggca 616

                                                                       
Query: 417 ttggtatatgagcagactctggcctgtggaaatcttcactttccaaacaaaaaaacatca 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 617 ttggtatatgagcagactctggcctgtggaaatcttcactttccaaacaaaaaa-catca 675

                                                                
Query: 477 tggaaagacttggttgttttgtttgtttgtttgttgtttgttttacaaagatg 529
           |||||||||||||||||||||||||||||||    |||||||||||| |||||
Sbjct: 676 tggaaagacttggttgttttgtttgtttgtt----gtttgttttacagagatg 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space:   476442
Effective search space used:   476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)