BAC Information

Click to search

BAC

Clone NameMSMg01-194E23
Chromosome3 (Build37)
Map Location 75,499,272 - 75,499,633
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667459, BC050789, Serpini2, Wdr49, Pdcd10, Serpini1
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194E23.T7 (MSMg01no194_e23.b1)MSMg01-194E23.TJ (MSMg01no194_e23.g1)
ACCAG383284AG383285
length743743
length of high quality
(start - end)		699 (45 - 743)653 (77 - 729)
definitionCHROMAT_FILE: MSMg01no194_e23.b1 PHD_FILE: MSMg01no194_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:08 2005CHROMAT_FILE: MSMg01no194_e23.g1 PHD_FILE: MSMg01no194_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGTTGTTGCCTTCAAGGTCTTTCTGGGATATTGGAACACTGGTG
AAGGCTTAACTATATCAGAATTCAATCTTAAAAGGCACTTAAGGCTTAAC
TATATCAGAATTCAATCTTAAAAGGCACTTTTAATAAGATAATACTAAAG
GAGAGCACGTGCATCCATACAACAGACTAACGCGGGGATAGGGTAAGAAT
GTACGGGTTATGAGAATGCCAAAGTTCCAGGAGGTGAGCATCCATGAAAC
TCTTTGCCTCATGAGTGCTCCCAGGCCTCTCCACCTACCAAGCAAACTTC
ACTGGAGTGTGCATAGCATTCTCCCATTCTTATATTTTTGCTGAAGTTCC
AGAATGTCCCACCTTGTCATAGCTATAGATCTTAGGAGTGCTCTAAAGAT
GAGTGGAAACAACAATTTACTAATAAAATAGTGCCAATAATAATAGCAAG
TATGATAATATATTGAACCCAATCCAGGGGATTCAATGCACTTAGGTTAT
CTTTAAATCTCTGGCCAATTCATCAATGTTCCAAGTGTCCAAGTGACTAT
TGCTAATATCTGGAATTTCTGCCTTTCTAGCCTTAATATATGCTATGTCC
TGCCCTATTGTTAAGAGTACTACTTCTAAGACCTTAACCTTTGCCTCCAA
TTCTTTATGTGGCTCTGTGGTATACTATCAATAAACCACAGCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTCTAACTTCCTATGTTCCCAG
AGTTCTCTAGAGACTTGGCTCATTTGAGGAATTGAAAGCAGAGGCCACAC
ACCTGCTCCTGGGAGCTTGTGTGTTTAAGAATCCTGAACTGGCCAACTCT
TGTTTTAGATGTCGTGTCATCATATTTAAAACTTATTAGGGGCTGGCAGA
CACCTCGGTGGTTAAAGGTTTCCACTACTAAGGCTGAGTACCTGAGTGCT
ATCTCCTTAACCCAGATGTGGTACACGGGGAGAACTGAAGCGGTCCTTAC
AGGTGTCAGTCAGGGAAGCAAACTAACAAAGTGATGGGAACGAAAGCCAG
GTGAGACAGACTTTGTCAGCCTACGTCAGACTTTAACGAGTCTAATGCCA
GGTATTTAAAACACACGACAGTTTGAGAAAAGGTTTCTAGACAACAGTCA
ATCTAATTCCCGGTTCATAATAAAGCTTAAAGTGTGACTACATAGAAACT
CCTTAACAGACAGAGTACAAGTGACCATGAGGGTCAGTTCTGTACCAAAA
CTGCCTAGACTCTCCTGTGGTCTCTGACCAAGACAGCATAGAGGTCAGCA
CACAATAGAATACATGTGATATCTTCCCTGAGAATGGGTATCAGTCTAAG
GAGGGGATAGACTGGGATAATCAGCCTGGAAGATTTGGGCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_e23.g1 MSMg01no194_e23.g1 CHROMAT_FILE:
MSMg01no194_e23.g1 PHD_FILE: MSMg01no194_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:08 2005
         (653 letters)



>mm_chr3_75499272_75500324
          Length = 1053

 Score =  692 bits (358), Expect = 0.0
 Identities = 361/362 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattctaacttcctatgttcccagagttctctagagacttggctcatttgaggaattgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tattctaacttcctatgttcccagagttctctagagacttggctcatttgaggaattgaa 303

                                                                       
Query: 61  agcagaggccacacacctgctcctgggagcttgtgtgtttaagaatcctgaactggccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agcagaggccacacacctgctcctgggagcttgtgtgtttaagaatcctgaactggccaa 243

                                                                       
Query: 121 ctcttgttttagatgtcgtgtcatcatatttaaaacttattaggggctggcagacacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcttgttttagatgtcgtgtcatcatatttaaaacttattaggggctggcagacacctc 183

                                                                       
Query: 181 ggtggttaaaggtttccactactaaggctgagtacctgagtgctatctccttaacccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ggtggttaaaggtttccactactaaggctgagtacctgagtgctatctccttaacccaga 123

                                                                       
Query: 241 tgtggtacacggggagaactgaagcggtccttacaggtgtcagtcagggaagcaaactaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgtggtacacggggagaactgaagcggtccttacaggtgtcagtcagggaagcaaactaa 63

                                                                       
Query: 301 caaagtgatgggaacgaaagccaggtgagacagactttgtcagcctacgtcagactttaa 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  caaagtgatgggaatgaaagccaggtgagacagactttgtcagcctacgtcagactttaa 3

             
Query: 361 cg 362
           ||
Sbjct: 2   cg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |