Query= MSMg01no194_f06.b1 MSMg01no194_f06.b1 CHROMAT_FILE:
MSMg01no194_f06.b1 PHD_FILE: MSMg01no194_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:10 2005
(626 letters)
>mm_chr3_123159422_123160451
Length = 1030
Score = 942 bits (487), Expect = 0.0
Identities = 519/531 (97%), Gaps = 4/531 (0%)
Strand = Plus / Minus
Query: 100 aaaacaaaacaaaacaaagaagcagcccagtcataaagttcacagccaggttgactacga 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aaaacaaaacaaaacaaagaagcagcccagtcataaagttcacagccaggttgactacga 789
Query: 160 gctcctgacgtgcgtactgaagtacgacataaacttcaaactgaactttttccttagcaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gctcctgacgtgcgtactgaagtacgacataaacttcaaactgaactttttccttagcaa 729
Query: 220 atactttttaattacaactctatgatatcaaaaacggtctgtccccttacc--cccccca 277
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 728 atactttttaattacaactctatgatataaaaaacggtctgtccccttacccacccccca 669
Query: 278 gcccctctactttgcaatttctgaaatgtttctcagactggtagctaatttcgctgcaca 337
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 668 gcccctctaccttgcaatttctgaaatgtttctcagactggtagctaatttcgctggacc 609
Query: 338 atattccaatagatctgagcctacactgccttcaaatcatacaagggaaattttgcataa 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atattccaatagatctgagcctacactgccttcaaatcatacaagggaaattttgcataa 549
Query: 398 tattattttctaaatacttgtattttgaaatttcactactctgatcattaaaacgtttct 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tattattttctaaatacttgtattttgaaatttcactactctgatcattaaaacgtttct 489
Query: 458 attccgagcagaggtctgagggtgactatgtccgccattatagatgtatatagatgtatt 517
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 488 attccgagcagaggtctgagggtgactatgtccgctattatagatgtatatagatgtatt 429
Query: 518 catcaggccagtcgtggatgtgtaaaactgtatccccatggactgacaccaaaaccaaaa 577
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 428 catcaggccagtcgtggatgtgtaaaactgtatccccatggaccgacaacaaaaccaaaa 369
Query: 578 aaaaaaaaaaa--gccttattacgcaataacgctgagcactcttctttctt 626
||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 368 aaaaaaaaaaaaagccttattacacaataacgctgagcactcttctttctt 318
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1030
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1020
Effective search space: 628320
Effective search space used: 628320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_f06.g1 MSMg01no194_f06.g1 CHROMAT_FILE:
MSMg01no194_f06.g1 PHD_FILE: MSMg01no194_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:10 2005
(298 letters)
>mm_chr3_123129134_123129829
Length = 696
Score = 534 bits (276), Expect = e-156
Identities = 291/296 (98%), Gaps = 2/296 (0%)
Strand = Plus / Plus
Query: 1 ctgctctcattcctgttttggtaacttttcctaggcatggctggttggggaggagcacac 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctctcattcctgttt-ggtaacttttcctaggcatggctggttggggaggagcacac 259
Query: 61 acactccctgtaattaacctctcacctaggctctgtaaggaaacccaataaattcattgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acactccctgtaattaacctctcacctaggctctgtaaggaaacccaataaattcattgg 319
Query: 121 actctttgatgagctcttgccatcgtttgtagttggaacctaggaggaggggcagatact 180
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 320 actctttgatgagctcttgccatcatttgtagttggaacctgggaggaggggcagatact 379
Query: 181 gttttccactctccctctgggaatgaattttagcaacataaatatttaaaattgtgtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttttccactctccctctgggaatgaattttagcaacataaatatttaaaattgtgtgat 439
Query: 241 tcttttaatgtaatcacagctaaaacctgaaaatttggatatgtaaatttatttca 296
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 440 tcttttaatgtaatcacagc-ataacctgaaaatttggatatgtaaatttatttca 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 696
Length adjustment: 9
Effective length of query: 289
Effective length of database: 687
Effective search space: 198543
Effective search space used: 198543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
