BAC Information

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BAC

Clone NameMSMg01-194H01
Chromosome3 (Build37)
Map Location 100,914,772 - 100,915,004
singlet/doubletsinglet
Overlap genenone
Upstream geneSpag17, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
Downstream geneLOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194H01.T7 (MSMg01no194_h01.b1)MSMg01-194H01.TJ (MSMg01no194_h01.g1)
ACCAG383366AG383367
length1,487735
length of high quality
(start - end)
---287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no194_h01.b1 PHD_FILE: MSMg01no194_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:18 2005CHROMAT_FILE: MSMg01no194_h01.g1 PHD_FILE: MSMg01no194_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTATTTCTTTNNNTTTTTTTCCTTTTTTTATTTCTNNTCCTCGNGCCG
CCCGGTGTGGTAGATGATTAATCTTTAAGAATATTGGAGGCCGCGTGAAG
AGGAAATNCACTGAATGCAGNGAGCAAGACGTGGNGNGNAANNGNNNAGG
TATTTTCTCACAAGGTAAGGAGAGAGAGGATAAGAAGAGAGGAGGAGAGA
GGGAATAGAGATGGCGGGTGGTGAGTGATGGTTGGGTGCGCAGCCGGTGT
GGGGGATTGTTGGTTGGAGCGGTAGAAGTTCGTGATAACAGGGAGTGAGG
AGAGAGTGAGGGACGGGCGAGGTAGTGTCTGTAAGATATGCTGTGCTGTG
GCGTGTGTGTTGTGTTGAGGGTGCTCTATGTTGGTTGTGTTTGCTTACTG
TTTTATTTATTATTTTTGATTCTGTGGCGTATGGTGCGCGTATATCAGTA
TAGAGAGAGATTTATATAATTAAAATATAGAATTAATATATAGGAGAGTG
TGTGGGGGTAGGGTGAGTGTTATTGTGAGTACGTAGGAAGTAGGAGAGAC
GGAGAGAGGAGAATATTAGAGGAGACGTTTTAGTTTGTATTATTTTGTGT
TTGTNAGCGAGGAGAGAGCAGTGAGTGTAGGAGTGGGGGGATTAGAAATA
GGAGGATAATTATAGTGATGAGAAGGAGCTGGCGCGATTGTTGTAGACGT
GTGTTTTGGATTGAGGGGTTGTCAGGGTGAGTGCGAGTATGGTGAGTGAT
TTAGGAGGAGATAGATGGAGGATTGTATTGCAGCACAATAACATCTTTAG
CTAAGTTCAGATTGTATCTTGTCTTGTACGCCATAGGTGTGTGCTGCTGG
TGTTGGAGATGGGATGTGAGAGGAGGAGGTGTTGCGTATGAGATATGATG
CATGTGTGGAGTGGGATTGTGGAAGGTGGTGCGTACGTGTTTTGTAATAT
ATGAGTTTATGATGAGGTGAGGCGGTCGTATGATGGGTGAGTGAGCTATA
TATATAATAATTGGAGGACGTAGCAGGTCATTGGATTCGGCAGGTATATT
GATGTGATAGTTAGAAGTATAGCACCTAATATAAGTTTTTCTATACGATA
TGTTATAGTGTGGAAGAGGAAGGTGTAGAGTGTGACATATGTTGCGGAGA
GATTATGTTGTGTATGAGGCTAGGCACACTTAGGACTTATGATATAGATA
GTGTGCTGTATATAGATGACGTCGTGTCGGCGCGTTATACTCGAGANCGG
GAGCATGAGACTGATAATATGTGTGTGAGATGTCTAGACGGCACGAGACG
GAGTCTAGTGTCGNGTGTTTACTAGGTGATGATATTGAGTTNGTGGTGAT
GTGCGGGAGTGTGTGTGTATCTGATGTGAGGAGTGTCTGGCAGGATGTGT
GTGCGTGCGTGCGACGGGGTGGTAGAGTAGTNCGGGGAGATCTTTGTAGA
GACTGTATATCGTTTACGACACCATATTGTNTGATAA
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCACCCCCTCATGGTCCAGAGGC
CTGATGTGCTTGGGAGAGTTGGCAAGGGACTCTCAGCCAAGCATCAAACT
CAACAAGGCTCTCTAACCCACCACCCTGTAGTTGGGTGGGCCTGCCTCCT
TCCTGGCCCACCTCCCTCCTCTCCAGGGTCCCTGTGGTACTAATTAGAAC
AACTTCCAACTAAGGTACCCATAAAAGAAAAGAAAAGAAAAGAAAAGAAA
AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA
AGAAAAGAAAAGAATATTATTTTTTACACCCCCCCACCACCCACACCATC
TATTATTAGCCGTAGTGCTTCAAATGGCATGTCTGACGCCTGAGACTATA
TTCATTGCTTTAAGTGGACACAACTGGGTTTCCATTAAAGACTCTTTTTC
CTCCCACAATAGAGTTTTGTGCTTTGGATTTGAATACAAAAGACTCCACA
GCTCTGGGGGGAAAATCAGCGTTCCTTGTTTAAAACGTCCCAAGGATGAA
TCATACATTCAGAAAGGCTCACTGGTATCCAGTGATCCCCTCCGACGCCC
GGGCCTTTTATTAATATTTGTAAAACAAACCACAGACGTTCCTGGGGAAA
CTGTCTTCTCTGGTGCAGAACATCAAACTTGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_h01.g1 MSMg01no194_h01.g1 CHROMAT_FILE:
MSMg01no194_h01.g1 PHD_FILE: MSMg01no194_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:18 2005
         (287 letters)



>mm_chr3_100914572_100915258
          Length = 687

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%), Gaps = 1/234 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaccccctcatggtccagaggcctgatgtgcttgggagagttggcaagggactctcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaccccctcatggtccagaggcctgatgtgcttgggagagttggcaagggactctcagc 260

                                                                       
Query: 61  caagcatcaaactcaacaaggctctctaacccaccaccctgtagttgggtgggcctgcct 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcatcaaattcaacaaggctctctaacccaccaccctgtagttgggtgggcctgcct 320

                                                                       
Query: 121 ccttcctggcccacctccctcctctccagggtccctgtggtactaattagaacaacttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttcctggcccacctccctcctctccagggtccctgtggtactaattagaacaacttcc 380

                                                                 
Query: 181 aactaaggtacccataaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa 234
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 aactaaggtacccataaaagaaaagaaaa-aaaagaaaagaaaagaaaagaaaa 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)