CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCATTAACTTATCTCTAATTATTATTGCACACAAACACATATATATG
CATATATATATATATATATATATATGAGTATATAGATAGATACATGTCCT
ACTGAGTCTATTTAATGTTGCTTGTATGTGCATGTATTGCTGATCAGTTG
GGTTAAATAACCAATAAGGAAGCTCTTCTCTAGAGAAGATTGACTCTCCC
TCTCTTTGAAGCCACGGCTTGCCCATCATTCTTCATCTAGAGGTAGGGCC
TTGGGAAAATCTCATCCATATACTTTGTTATGTCTACTGGTGTGGTTATT
ACTCAGGTCTTGTTTAAATGGTCATAATATGAGATTTCATGGGTGCAGCT
TTCCTCTCGACTCAAGAACACAGTGTTTACCAGCTGACATCCTGGTTCTT
TTGTTTGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCCCCT
GAATGTGTGAGTTATATTATAGATATCCCTGTTGGAGCTGGACATGCCAA
GCAACAATGCTCCAGTCTAATCTCTGCACCTCGAGATGGACATAATAATT
CCTTTAACTTTATACTTTCATCTTTTCCGACCCTAATGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAGGAAACCTATGTATTATTG
ACATCTTATAAGTATTCATGTGCACTCAATCTTGTTGAAAATCCAAATGC
TTTTCTGTATTTCCACATGGCCCCTCATATGTTTCTTTTGATTTTTTAGT
GCAGTATGAAAAAACATGAGCATGTAAAAAAATTCTCCAAAATGAATACT
CAAATCTATCCATTATTATTGCCTAAAGCTTGCATGAGGATAAACAGTTC
TCAGCAGCCACTGTCAACTTCTGGGGACTTTCATAAGCAGGATTGATGGC
AGCCCATGCTCATGAGAACCTAGTGTCTATGCCACCACTTCAGAGGCTTT
CTGCCTGGGTCCATTTCCTTCCCACTGTGAGAAACTGAAGGCTAGGAGGT
TAAGAAGCGGGGTGGCGTCTCTGCACACAGCAATCACGTGGGACACATGC
TTGTCTTGTCACCTTAATAACCTTCCTCGTGGGCCCTCATAGAATTATAC
ACACTGCAAAAGAGTGATTTTCTAACTGGAAGAAAAGCAGGCATTTCACA
TAATCTAAATCACCCATAGCTAANATGCTCTAGTTTGGTTAATCCTGCAT
CTGTTTGTTTCTATCCTGATATTTTAAACTCCATTTTAATTAACCAACAT
CTGTTTATTTGCACAGTTAATCTCACCCTTTTTAG

Query= MSMg01no194_k22.g1 MSMg01no194_k22.g1 CHROMAT_FILE:
MSMg01no194_k22.g1 PHD_FILE: MSMg01no194_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:38 2005
         (557 letters)



>mm_chr3_54095420_54096374
          Length = 955

 Score = 1002 bits (518), Expect = 0.0
 Identities = 547/557 (98%), Gaps = 2/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaggaaacctatgtattattgacatcttataagtattcatgtgcactcaatcttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaggaaacctatgtattattgacatcttataagtattcatgtgcactcaatcttgtt 260

                                                                       
Query: 61  gaaaatccaaatgcttttctgtatttccacatggcccctcatatgtttcttttgattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaatccaaatgcttttctgtatttccacatggcccctcatatgtttcttttgattttt 320

                                                                       
Query: 121 tagtgcagtatgaaaaaacatgagcatgtaaaaaaattctccaaaatgaatactcaaatc 180
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 -agtgcagtatgaaaaaacatgagcatgtaaaaaa-ttctccaaaatgaatactcaaatc 378

                                                                       
Query: 181 tatccattattattgcctaaagcttgcatgaggataaacagttctcagcagccactgtca 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 379 tatccattattattgcctaaagcttgcatgaggatgaacagttctcagcagccactgtca 438

                                                                       
Query: 241 acttctggggactttcataagcaggattgatggcagcccatgctcatgagaacctagtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acttctggggactttcataagcaggattgatggcagcccatgctcatgagaacctagtgt 498

                                                                       
Query: 301 ctatgccaccacttcagaggctttctgcctgggtccatttccttcccactgtgagaaact 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 499 ctatgccaccacttcagaggctttctgcctgggtccatttccttcccactgtgagaaatt 558

                                                                       
Query: 361 gaaggctaggaggttaagaagcggggtggcgtctctgcacacagcaatcacgtgggacac 420
           |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||
Sbjct: 559 gaaggctaggaggttaagaagctgggtggcttctctgcacacagcaatcacgttggacac 618

                                                                       
Query: 421 atgcttgtcttgtcaccttaataaccttcctcgtgggccctcatagaattatacacactg 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 619 atgcttgtcttgtcaccttaataaccttcctcatgggccctcatagaattatacacactg 678

                                                                       
Query: 481 caaaagagtgattttctaactggaagaaaagcaggcatttcacataatctaaatcaccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 679 caaaagagtgattttctaactggaagaaaagcaggcatttcacataatctaaatcacccg 738

                            
Query: 541 tagctaanatgctctag 557
           ||||||| |||||||||
Sbjct: 739 tagctaaaatgctctag 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 955
Length adjustment: 10
Effective length of query: 547
Effective length of database: 945
Effective search space:   516915
Effective search space used:   516915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)