BAC Information

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BAC

Clone NameMSMg01-194L09
Chromosome3 (Build37)
Map Location 8,286,033 - 8,286,315
singlet/doubletsinglet
Overlap genenone
Upstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072
Downstream geneLOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194L09.T7 (MSMg01no194_l09.b1)MSMg01-194L09.TJ (MSMg01no194_l09.g1)
ACCAG383530AG383531
length732736
length of high quality
(start - end)
634 (46 - 679)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no194_l09.b1 PHD_FILE: MSMg01no194_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:40 2005CHROMAT_FILE: MSMg01no194_l09.g1 PHD_FILE: MSMg01no194_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTACCTATGTACCCAATTTTTAATGGGGTTACTTGAAATT
CTGGAGTCCAGCTTCTGGAGCTCTTTCTATATATTGGATATTAGACCCCT
ATCAGATTTGGGATTGGTAAAAATCCTTTCCTGGTCTGTTCGTGCCCTTT
TTGTCTTATTGACAGTGTCATTTGATCTTACAAAAGCTTTGCAATTTCCT
GAGGTCCCATTGTTCTTACAGCACAAGCCAATGGTGTTCTTTTTAAGAAT
TGTTCCCCTGTGCCCACATCTTCAAGGCTTTTTTCCACTTTCTCCTCTAT
AAATTTCTGTGTCTCTGATTTTATGTGGAGTTCTTTGATCCACTTAAACT
TGATCTTTGTACAAAGAGAAAAGAATAAATCAATTCACATTCTTCTACAT
GATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCCTTTTC
CACTGGATGGTTTTATCTCCCTTGTCAAAGATCAAGTGATCATAGGTGTG
TGGATTCATTTCTGGGTCTTCAATTCTATTCCATTGATCTACCTGTTTGT
CGATGTACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGC
TTGAGGTCAGTCATGGTGATTCCCCCAGGGGGAATTGTTGAGAATAGTTT
TTGCTATTCCAGGTGTTTTATTACTCCAGATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGAGTGGGTTGGATCTAAGGA
CTCCTGCCATCAGGAAGTGTGTATGAGACATGTTTGGTGGACCAATAGTC
TGTGGTCTAATGAGACTAGAAGCTGCCAACTGATGATTCATATATGTTTG
CCCAGGCTATACACAGGGGTGTGGCACTGCATGATCCCTTTGGAGTTTAT
ATGTCACCACAGGACAGGAAGAAGATTGCTGGTTAACCTGGATTTTCAGC
ATCCAGTAGGGTGGGCTGAAAGTAGAAACTGTAACAAAATGATATTTCTT
TCTAATAAATTTTTGTTCTACCCCCCCCCCCTAATCATAGTAGCTTTCTT
TATGTGTGTGCAGGAGCGGAGTTAGGAAAAAAATATGTTTAAGGGAGTAA
AGGGTCATCGATCCTGCTGTCCTTTCTGCCTTCGTAAGCTGTGTTCCTTA
TAGTGGGAGACTCTTTGGGCCCCCAGCATTCTCTTGTCTTTCCTAACACT
GTCTATCAACATCTGTTATCTCCCACTATTGATTGTTATTGTCTTCAAAA
CCATCGAAGGTCTGAATTATACTAAATATGTCCTTATGATACTATCTTCC
TTCGATAACTTTCATTTTTTATAAAATCCAAACTGGCACTATTCTTATCA
GATTTGTTTTTACTTTCTTCGCCACGATCCATTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_l09.g1 MSMg01no194_l09.g1 CHROMAT_FILE:
MSMg01no194_l09.g1 PHD_FILE: MSMg01no194_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:40 2005
         (284 letters)



>mm_chr3_8285833_8286516
          Length = 684

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagagtgggttggatctaaggactcctgccatcaggaagtgtgtatgagacatgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctgagagtgggttggatctaaggactcctgccatcaggaagtgtgtatgagacatgtttg 424

                                                                       
Query: 61  gtggaccaatagtctgtggtctaatgagactagaagctgccaactgatgattcatatatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 423 gtggaccaatagtctgtggtctaatgagactagaagctgccaactgatgattcatacagg 364

                                                                       
Query: 121 tttgcccaggctatacacaggggtgtggcactgcatgatccctttggagtttatatgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttgcccaggctatacacaggggtgtggcactgcatgatccctttggagtttatatgtca 304

                                                                       
Query: 181 ccacaggacaggaagaagattgctggttaacctggattttcagcatccagtagggtgggc 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 303 ccacaggacaggaagaagattgctggttaacctggattttcagcattcagtagggtgggc 244

                                                      
Query: 241 tgaaagtagaaactgtaacaaaatgatatttctttctaataaa 283
           |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 243 tgaaagtagaaactgtaacaaaatgatattcctttctaataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)