CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAA
TTCTGTGTATCACGCTGGATGGGTAGGTTTAAAACAATGCTCAAATGCAT
TGAAGCCTACTTTAAGGCATGACTGGGCTTATTTTCAAGTTCAAAATAAT
CAAGCACATTGGTTAAAAGGGAGGCTTTTTTTGTTTCTTTATCTTCCTTT
CCTTAGTCTCTCAGTTGGACCACTATTCTTCCCCAGTCTCTCATGGAACA
CCCACTGCTTCCCTCCCCTTTCTTACCACTGGAAGCTTTCTTTTCACTGA
AGCAAGGCCACAGTGTGAGGAATTTCATAAAAACAAGACAGCCCATCCCC
CACTCCCACCTCAGAATGCTTTATAGAACCAGGGCTGCCTCACCCTGTAC
GAGTTGGTTTGCCTAGAACAGTCTTGCTTCTCAAACGATGCCCATCCCAA
TAAGACAACTAGCCTAAAAGAATCAGTTTCAGGAATAAAACATAGTTTAG
GAAAGACACAAAGAATAACAAAGTTGCCGCGTCACTTACCTCTTTGTTCT
TTATGACCACCAGACAGGTTAGCCAGCTGAATCAAAAGGAAAGCAACAGG
AGAGATCGGTAAGTCAGCCAAGACTTTAGAGTCTAAAGGGCTTCAAAAGC
TGACAGGGGAATATTTTTAAAATTTCATTTTAGATTTGAATGGAAAGAGG
GATGACATTTTTTTTTTCTAAAGG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGTTTAGTTTTATACCCCCCCCCCT
TTTTTTTTGATTGGGTCGTTTGATTCTTTAGTGGTTAGTCTCGTGAGTTC
TTTATATATTTTGGATATTATCCCTCTATTGGATGTAAGGTTAGTGAATA
TTTTTTCCCAATCTTTAAGTTGCCTATTTGTCTTATTGACTATAATATGT
CCTTTGCCTTATAGAAGCTTTCTAGTTTCATGAGGTTCCATTTATCAATT
CTTGATCTTAGAGTGTGAACCATTGGAGTCCTGTCTAGAAAATATGCTCC
TATGCCAATAAGTTCAAGGCTCTTTCCCACTTTCTCCTCTATTACATTAA
GTGTATCTAGTTTTGTATTGAGGTCCTTGATCTACTTGGACTTGAGCTTT
GTGCAAGGTGACAAATATGGGTCTATTTTCTTTTTTTTTTTTTTACATAC
AGACAGCCAGTTAGATCAGCACCATTTATTCAAGATGCTTTCTTTTTTCC
ATTGTATATTTTTTGCTTCTTTGTCAAAAATCAAGTGTCCGTAAGAGTGT
AGTTTTATTTTTGGTTCTTCAATTCTATTCCATTGATCAATGTGTCTGTC
TTTGTACCAGTACCATGCAGTATTTATCACTACGGCTCTGTAGTAAAACT
TGAGGTTAGGGGTAGTGATTGCTCC

Query= MSMg01no195_a14.b1 MSMg01no195_a14.b1 CHROMAT_FILE:
MSMg01no195_a14.b1 PHD_FILE: MSMg01no195_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:07 2005
         (680 letters)



>mm_chr3_133921960_133923043
          Length = 1084

 Score = 1253 bits (648), Expect = 0.0
 Identities = 666/674 (98%), Gaps = 4/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctgtgtatcacgctggatgggtaggtttaaaacaatgctcaaatgcattgaagcc 67
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctgtgtatgacgctggatgggtaggtttaaaacaatgctcaaatgcattgaagcc 267

                                                                       
Query: 68  tactttaaggcatgactgggcttattttcaagttcaaaataatcaagcacattggttaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tactttaaggcatgactgggcttattttcaagttcaaaataatcaagcacattggttaaa 327

                                                                       
Query: 128 agggaggcttttttt----gtttctttatcttcctttccttagtctctcagttggaccac 183
           |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agggaggctttttttttttgtttctttatcttcctttccttagtctctcagttggaccac 387

                                                                       
Query: 184 tattcttccccagtctctcatggaacacccactgcttccctcccctttcttaccactgga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tattcttccccagtctctcatggaacacccactgcttccctcccctttcttaccactgga 447

                                                                       
Query: 244 agctttcttttcactgaagcaaggccacagtgtgaggaatttcataaaaacaagacagcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agctttcttttcactgaagcaaggccacagtgtgaggaatttcataaaaacaagacagcc 507

                                                                       
Query: 304 catcccccactcccacctcagaatgctttatagaaccagggctgcctcaccctgtacgag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 catcccccactcccacctcagaatgctttatagaaccagggctgcctcaccctgtacgag 567

                                                                       
Query: 364 ttggtttgcctagaacagtcttgcttctcaaacgatgcccatcccaataagacaactagc 423
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 568 ttggtttgcctagaacagtcttgcttctcaaaggatgcccatcccaataagacaactagc 627

                                                                       
Query: 424 ctaaaagaatcagtttcaggaataaaacatagtttaggaaagacacaaagaataacaaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctaaaagaatcagtttcaggaataaaacatagtttaggaaagacacaaagaataacaaag 687

                                                                       
Query: 484 ttgccgcgtcacttacctctttgttctttatgaccaccagacaggttagccagctgaatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttgccgcgtcacttacctctttgttctttatgaccaccagacaggttagccagctgaatc 747

                                                                       
Query: 544 aaaaggaaagcaacaggagagatcggtaagtcagccaagactttagagtctaaagggctt 603
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 748 aaaaggaaagcaacaggagagatcgataagtcagccaagactttagagtctaaagggctt 807

                                                                       
Query: 604 caaaagctgacaggggaatatttttaaaatttcattttagatttgaatggaaagagggat 663
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 808 caaaagctgacaggggaatattttaaaaatttcattttagatttgaatggaaagagggat 867

                         
Query: 664 gacatttttttttt 677
           ||||||||||||||
Sbjct: 868 gacatttttttttt 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1084
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1074
Effective search space:   719580
Effective search space used:   719580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)