BAC Information

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BAC

Clone NameMSMg01-195G22
Chromosome3 (Build37)
Map Location 68,545,408 - 68,545,764
singlet/doubletsinglet
Overlap genenone
Upstream geneEG208426, EG545531, LOC631379, Schip1, Il12a
Downstream geneLOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195G22.T7 (MSMg01no195_g22.b1)MSMg01-195G22.TJ (MSMg01no195_g22.g1)
ACCAG383954AG383955
length749752
length of high quality
(start - end)		576 (38 - 613)479 (71 - 549)
definitionCHROMAT_FILE: MSMg01no195_g22.b1 PHD_FILE: MSMg01no195_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:39 2005CHROMAT_FILE: MSMg01no195_g22.g1 PHD_FILE: MSMg01no195_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCT
TTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGAAG
TCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTA
GATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCT
ACACGATAACAACCGGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTT
TCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAG
GTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTG
CCTGTCTCTATATCAGTACCATGCCGCTTTTATCACAATTGTTCTGTAGT
AAAGCCTTACGTTTGTCACGCTGATTCCTCCATATGTTCTTTATCCCCGT
AAATACTTCTTGCTATTCACGTTCTTCGTTATTTTGTCCCCTTTTTTCN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGATGTCAGAAAAGCATTAAAGTTAAAGGT
ATCTAGCACCTAGTGTGGTAAACATAGTGATTCCTTCTCCCAGTGTTGGC
TTGGTGGCTTCTTTGATTGAGTGGGTGACTGAAGCCAATGCTTAGGGTCA
CAGGAGTCATCCTTAAGCAATGCAATGCTCTTTCTTCCTCTTCTCCTCCT
CTTCCTCCTCCCCCTCTCCTTCTCCTCTTCCTCCTCCTCCTCGATTTCTT
TATTTATTGTATATACAGCATTCTGACTGCAGGTCAGAAGAGGGCACCAG
ATTCCATTACAGATGGTTGTGAGCCACCATGTAGGTGTTGGGAATTGAAC
GCAGAACCTCTGAAAGAGCAGCCAGTGCTCTTAACCTCTGAGCTTTCTCT
CCAGTCCCATCTTTCTTTTTTTCTGAGCATGCAAATAGAAGGGTTTCCTT
AAGTCTGACAAAGTCAAGGTAGGGTTGGTGGTTAGGGCATGTCTGAGGGT
TGTAGGGCCTTTTCTACAAGAGAGTCAGCTTAGAGGTTTATCTTAAGGGT
CATATGAGAACCTCATATGACGTGTCATCTGAGTCCTGGCTAGGGGATGC
ACATGCATATAGCACCCTGCCACTTCCAGAATGGCATGCTCACTGGTAGA
CGTGCCGATGTCTATCCAACACCTTTTTTGTGACAAGCCGTTTGTCTTTG
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_g22.g1 MSMg01no195_g22.g1 CHROMAT_FILE:
MSMg01no195_g22.g1 PHD_FILE: MSMg01no195_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:39 2005
         (479 letters)



>mm_chr3_68545408_68546286
          Length = 879

 Score =  545 bits (282), Expect = e-159
 Identities = 338/358 (94%), Gaps = 5/358 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgtcagaaaagcattaaagttaaaggtatctagcacctagtgtggtaaacatagtga 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agatgtcagaaaagcattaaggttaaaggtatctagcacctagtgtggtaaacatagtga 298

                                                                       
Query: 61  ttccttctcccagtgttggcttggtg-gcttctttgattgagtgggtgactgaagccaat 119
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 297 ttccttctcccagtgttggcttgg-gagcttctttgattgagtgggtgactgaagccaat 239

                                                                       
Query: 120 gcttagggtcacaggagtcatccttaagcaatgcaatgctctttcttcctcttctcctcc 179
           ||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||
Sbjct: 238 gcttagggtcacaggagtcatccctgagcattgcaatgctctttcttcctctcctcctcc 179

                                                                       
Query: 180 tcttcctcctccccctctccttctcctcttcctcctcctcctc---gatttctttattta 236
           |||||| | |||||||||||| |||||||||||||||||||||   ||||| ||||||||
Sbjct: 178 tcttccacttccccctctcctcctcctcttcctcctcctcctcctcgatttatttattta 119

                                                                       
Query: 237 ttgtatatacagcattctgactgcaggtcagaagagggcaccagattccattacagatgg 296
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||
Sbjct: 118 ttgtatatacagcattctgactgcaggtcagaagggggcaccggattccattatagatgg 59

                                                                     
Query: 297 ttgtgagccaccatgtaggtgttgggaattgaacgcagaacctctgaaagagcagcca 354
           || ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 58  ttttgagccaccatgtaggtgttgggaattgaacacagaacctctggaagagcagcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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