NAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCC
TGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
TAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGAAACTTACACAATATATATTCACTGATAAGTGGATATTAGCCCC
ACACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGACAC
TCAAGAAGAATGAAGACTGAAGTGTGGACACT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGAGGAGAAGACAAGTGGATC
CTAGATATTAATAGCACCCAGCCTTGTCTAATAAGTGAGTCTATATCTCA
AAGAGAGTTCCTTTGTCAGAAACAACATGGATGGAATTTAAGGAATAGGA
CTTGAAGTACCTTTTAGTTCCCACACTCAGACACACATATGTGCACGTTA
CCAGATCAGACATGAATGAACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACTCACTTATATGCATTAGTA
TACAAAACCACACAAGCATGCACATGCATGTACAGACCTTTAATAAGTGT
CTGAATCCAAGGAACATATAGCTAGAACGTTTCTTCCAGAAATGCTCACA
GGATCAAGGAAAACACAGTTCTCAATTTCAGTTTCTTCACAAGCTCCCAG
TCTGATTTCTCCCCTTCTCAGACCAAAGGGTCTTTCTCTTTTCACCCATC
TGTGCACTTGCCTGAAGATGAAAGTGTTTTCTAATCCAGAGATATTTCTT
TTTCTTCTCAGTTTTGTTTTCAAAGCATCCAGAACTGAGCTCCTCGATCT
CTATATAATCAACCAGTGAGCTGCAAAGTCCAGCTTCATAAGTATGAAGT
ACACGTCCTGCTTAATTAGGCCCTGC

Query= MSMg01no196_a02.g1 MSMg01no196_a02.g1 CHROMAT_FILE:
MSMg01no196_a02.g1 PHD_FILE: MSMg01no196_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:24 2005
         (599 letters)



>mm_chr3_13137136_13138134
          Length = 999

 Score =  944 bits (488), Expect = 0.0
 Identities = 538/582 (92%), Gaps = 42/582 (7%)
 Strand = Plus / Minus

                                                                       
Query: 18  gtggatcctagatattaatagcacccagccttgtctaataagtgagtctatatctcaaag 77
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 999 gtggatcctagatattaatagcagccagccttgtctaataagtgagtctatatctcaaag 940

                                                                       
Query: 78  agagttcctttgtcagaaacaacatggatggaatttaaggaataggacttgaagtacctt 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 agagttcctttgtcagaaacaacatggatggaatttaaggaataggacttgaagtacctt 880

                                                                       
Query: 138 ttagttcccacactcagacacacatatgtgcacgttaccagatcagacatgaatgaacac 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ttagttcccacactcagacacacatatgtgcacgttaccagatcagacatgaatgaacac 820

                                                                       
Query: 198 acacacacacacacacacacacacacacacacacacacacacacacacacacacacactc 257
           |||||||||||||||||                                          |
Sbjct: 819 acacacacacacacaca------------------------------------------c 802

                                                                       
Query: 258 acttatatgcattagtatacaaaaccacacaagcatgcacatgcatgtacagacctttaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acttatatgcattagtatacaaaaccacacaagcatgcacatgcatgtacagacctttaa 742

                                                                       
Query: 318 taagtgtctgaatccaaggaacatatagctagaacgtttcttccagaaatgctcacagga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taagtgtctgaatccaaggaacatatagctagaacgtttcttccagaaatgctcacagga 682

                                                                       
Query: 378 tcaaggaaaacacagttctcaatttcagtttcttcacaagctcccagtctgatttctccc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaggaaaacacagttctcaatttcagtttcttcacaagctcccagtctgatttctccc 622

                                                                       
Query: 438 cttctcagaccaaagggtctttctcttttcacccatctgtgcacttgcctgaagatgaaa 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttctcagaccaaagggtctttctcttttcacccatctgtgcacttgcctgaagatgaaa 562

                                                                       
Query: 498 gtgttttctaatccagagatatttctttttcttctcagttttgttttcaaagcatccaga 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgttttctaatccagagatatttctttttcttctcagttttgttttcaaagcatccaga 502

                                                     
Query: 558 actgagctcctcgatctctatataatcaaccagtgagctgca 599
           |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 actgagctgctcgatctctatataatcaaccagtgagctgca 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)