BAC Information

Click to search

BAC

Clone NameMSMg01-197C12
Chromosome3 (Build37)
Map Location 26,958,721 - 26,959,003
singlet/doubletsinglet
Overlap genenone
Upstream geneNlgn1, LOC229152, Spata16, LOC665258
Downstream geneEct2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197C12.T7 (MSMg01no197_c12.b1)MSMg01-197C12.TJ (MSMg01no197_c12.g1)
ACCAG385000AG385001
length1,707700
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no197_c12.b1 PHD_FILE: MSMg01no197_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:56 2005CHROMAT_FILE: MSMg01no197_c12.g1 PHD_FILE: MSMg01no197_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAATAAAATATGTATGTTTTATACTACACACGTAAAAATACTGAGTA
TAATATCGTCTCAGAGNGATATATATAACAATACAAGTGCAAAATAATAT
TACTATGGGTGAGGGAGAANGGCGCAGCACGTGACATTTATCTAACCACC
ACCTCCAGCCATCGCTCTACCGCAAGCGATTGAGGGACGCACGGGTACTG
AATGGTCGTATATATATCGACAAATATATGTATACGATCTAGATCCCCGC
CTGACTTGTCGCCGTTGGGTGTTTATACACCACGCCACCTTCACCCCACC
GTATCTCGCACTCGTTTATTTATTGTAGTTGCGCCANGTAGATACGGCGC
ACGCCGGGCGCTGATCAAATTATCTAATTAGGATTATGCTAGAGGAATAT
TTATTAGCCGACACACAAAAAGGAGAGAGAGAGCATCAANATAGGAAAGA
CACGAGAATAATACCACATATATGTTTAATTCACCACGACATATGTATAT
TCCTCTCACGATGTGACTAATACTACTGTAGTATATCTGCATATATCATT
ATGAAGCAACTTAAAATATAAATGATAATTATAATAATATCAAGTTTGTG
TTTGCCTCATAGCGACGACAGACCGGCCGCACGCCCTCAGCGTCTGCGCA
CAGCGGCGGCGATGTTTTGTGTACCGAGAGGAGCGGCGGGCTGTCTGTTA
TTATTACTTANTATATATATCTTGATAGTTNCGTGTTCGGATTGGCCGCT
CTTGTCGTAAATGTGCAGCCACCACACTATTGTACATTGATATTATTAAT
TAATGTACTAACACTATCATCTATATTGCAGCGCATATGAATATATATAG
CGTGATAGTGTGTCNCGCGCGGCATGTAGTAGAGATATACGGTATACACA
CTTGATNATCACCACACAATACCGTATAGCTTCGCCGACAGAGCCGCTCT
GTGACTATGTGGTATAATGGTGGCTATCGTGAGTCGAATAATGAGTGATA
CTATGAGTAGATAGTTGATGAGATGGGATCGGTCGTGCGCATTGANTAAC
TCGCTCAAGACGATTGATGCACGAACTCACTATCACGCGGATAGAGAGGA
TCATACGCCTCACCAGACGCTCTATGATACTGCGCACATAGTATGATAAG
AAAAGCGGCCACGACGCCCACTAGGGTAGCAGCCTGTACGTCTATAGCTG
TCGTAGAATGCTAAGATATAATAGAGGTGAGTGATATATACGGAGTGGTA
AACTGATATCATGAGCACGCGGGCAGCATCACGCCCAGCCGCCCACCGTC
TGACGCCGCTTCAACATATCGCGTAAGATCTGATAGTATCAACCAACATA
GTTGAATATAGACCCGAACGAGGCACGTGTGTGTGCGCGACTTATGCATG
CGTATGTATATATATATCGCGTGACGCCCGCAATATAGCGGTATTGTATT
ATGTCTTAATGTTATTCTCTCACAATATGCGCTCACTGATGTGTCCTTAT
GTTTTATATTTTGATAATAACCGACGACAGATGTGCACAGATATTCACAT
TGTCATAGCACACAATNGNTGTGTCGTTACACGCTTATAATNACAGCACA
CACATTCTATCTATTGATGTTATTATATATATATAGAGAACCGCACTAAC
GTCTACATCTGCAGTGTCTGTTGTTANATGATTATACCATGCGGCACGCG
CTGCGCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCACCAATCCTTGAAGTGA
AATTACCCCCGCACATTTGGGCTTCAAGCAGGGATAAGAGCAGCAGCCTT
CATTATTCAGCCAATACATGATGGGAAGAAATGCTTTCTGAGGAAGAATG
CCACCTCACGGGGAGGAAAGATGAGTCAGGGTGGAGCAGAGTGAGCCCGC
CATTTAACCATCATCACCCTGACCTGTCCGACTCCGGCTAGTGCATGTTT
GGGTCAAAGAAAAAGAAAGTAGGCAATTAAACAAACACCAGAGCATTGAG
GGGCTTCATATTTTTTAGGGGCTGCCCTGCGAGCAAGCTGGATAGAGATG
TGCGATGCTTTTAATGCATCCCGTTTCCTAATTAGCAATCAGGGCCCATT
TGTCAGTCATTCCAGCCATGACACATGCAACCCTGGAACATAGGGCGGAG
TAAGGCAAGTTCAGAAAATCAATTATGCCTATGCTTACATTCCCTTAAGG
CTGGGGTGTTGCAAAAACTGCCTAAACATTGCCGTTCTACTTACAAAGGA
GCAGGAAGGAAGGGTAAGACTGCAATTCAGTATAATGAATAAATCTCTGG
CTGTTTGGGGAAAGGTACAATGGCTGAATATTTATGAGACTGCTGACGGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_c12.g1 MSMg01no197_c12.g1 CHROMAT_FILE:
MSMg01no197_c12.g1 PHD_FILE: MSMg01no197_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:56 2005
         (283 letters)



>mm_chr3_26958521_26959203
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatttcaccaatccttgaagtgaaattacccccgcacatttgggcttcaagcagggata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttcaccaatccttgaagtgaaattacccccgcacatttgggcttcaagcagggata 260

                                                                       
Query: 61  agagcagcagccttcattattcagccaatacatgatgggaagaaatgctttctgaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagcagcagccttcattattcagccaatacatgatgggaagaaatgctttctgaggaag 320

                                                                       
Query: 121 aatgccacctcacggggaggaaagatgagtcagggtggagcagagtgagcccgccattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgccacctcacggggaggaaagatgagtcagggtggagcagagtgagcccgccattta 380

                                                                       
Query: 181 accatcatcaccctgacctgtccgactccggctagtgcatgtttgggtcaaagaaaaaga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 accatcatcaccctgacctgtccgactccggctactgcatgtttgggtcaaagaaaaaga 440

                                                      
Query: 241 aagtaggcaattaaacaaacaccagagcattgaggggcttcat 283
           |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aagtaggcaattaaacaaacactagagcattgaggggcttcat 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)