Query= MSMg01no199_a20.b1 MSMg01no199_a20.b1 CHROMAT_FILE:
MSMg01no199_a20.b1 PHD_FILE: MSMg01no199_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:29 2005
(510 letters)
>mm_chr3_128513415_128514324
Length = 910
Score = 721 bits (373), Expect = 0.0
Identities = 457/497 (91%), Gaps = 24/497 (4%)
Strand = Plus / Plus
Query: 25 ctgtacagagaaaccctgtctcaaaaaacaaaaacaaaaacaaaataaacaacaacaaca 84
|||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 219 ctgtacagagaaaccctgtctcaaaaaacaaaaacaaa--------aaacaa-aacaaca 269
Query: 85 acaacaaaaaagtctggcttttacataaaaatagaagattaaaaataaatacattaatta 144
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acaactaaaaagtctggcttttacataaaaatagaagattaaaaataaatacattaatta 329
Query: 145 acaaatttagtgtaaagttatatataaaacttaa-tctttaaaaaatagatggtca---- 199
||||| |||||||||||||||||||||||||||| | ||||||||||| ||||| |
Sbjct: 330 acaaagttagtgtaaagttatatataaaacttaattttttaaaaaatacatggttatata 389
Query: 200 ----tatatatat--atgtata----catatatatggtacagaaaatataatatgataca 249
||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 390 tatgtatatatatgcatgtatatatgtatatatatggtacagaaaatataatatgataca 449
Query: 250 acatagaagtacagatattgaatgtacgtgttttgaaatcacctagtaatagatcctgaa 309
||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 450 acatagaagtatagatattgaatgtatgtgttttgaaatcacctagtagtagatcctgag 509
Query: 310 tgtgcaacctgtatgagtttgggcaagttatttagcctgataatgccaaaatcattattt 369
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 510 tgtgccacctgtatgagtttgggcaagtaatttagcctgataatgccaaaatcattattt 569
Query: 370 tacgcaaaatataaactagcatttagtttgaagatcagtattactctgcttgcttcagag 429
|| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 570 tagggaaaagataaactagcatttagtttgaaaatcagtattactctgcttgcttcagag 629
Query: 430 ttggtagtatatgctcattagtgataagttcttatttgaaactgctatttacttaattag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttggtagtatatgctcattagtgataagttcttatttgaaactgctatttacttaattag 689
Query: 490 ttataatatgtgtattg 506
|||||||||||||||||
Sbjct: 690 ttataatatgtgtattg 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_a20.g1 MSMg01no199_a20.g1 CHROMAT_FILE:
MSMg01no199_a20.g1 PHD_FILE: MSMg01no199_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:29 2005
(643 letters)
>mm_chr3_128548476_128549518
Length = 1043
Score = 1052 bits (544), Expect = 0.0
Identities = 550/552 (99%)
Strand = Plus / Minus
Query: 1 actttagttctgttactggacaacggagaagataaaattgactattgaaaattgctgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 actttagttctgttactggacaacggagaagataaaattgactattgaaaattgctgaag 493
Query: 61 gatgctgagtgtcttctatgatccatggactttgcgacaatttgacttgactcatagctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gatgctgagtgtcttctatgatccatggactttgcgacaatttgacttgactcatagctt 433
Query: 121 ccaattttgccacaacccatagaggaagggatttatctcgtcttaaagatgagaaaacaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 432 ccaattttgccacaacccatagaggaagggatttatctcatcttaaagatgagaaaacaa 373
Query: 181 gggtaaacagctttaataatatagcccataacaataataatgaaatcattttctccaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gggtaaacagctttaataatatagcccataacaataataatgaaatcattttctccaaat 313
Query: 241 aagtattagagataaattccttataaacaaaaataagattgattataataactactaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aagtattagagataaattccttataaacaaaaataagattgattataataactactaatt 253
Query: 301 taagttagcaaagtctttaatttttttagtatctattatgcttttacaagtacaaggctc 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 252 taagttagcaaagtctttaatttttttagtatctattatgcttttagaagtacaaggctc 193
Query: 361 cctggtactaaaggcagaggaggctcaaattccttctataaaatagcatagtatttgcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cctggtactaaaggcagaggaggctcaaattccttctataaaatagcatagtatttgcat 133
Query: 421 gtaatctattcaaaggaatcttccataataatgtaacaatataaccatgcaatcattatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gtaatctattcaaaggaatcttccataataatgtaacaatataaccatgcaatcattatc 73
Query: 481 taaatgattgccagagtgcatatatattagagaataaatcagaaggatagtttatagatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 taaatgattgccagagtgcatatatattagagaataaatcagaaggatagtttatagatg 13
Query: 541 gaatcaacatag 552
||||||||||||
Sbjct: 12 gaatcaacatag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
