TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCCTTGGCTTCCCTCAGTGGACTATGATTCAGGATAGGTAAGCC
AAATAAATAGTTCCCTCCCCAAGTTTATTTGGTCATGGTGTTTTATCACA
GCAATAAAAATCCTAAAACAGCAGGTACACTTGATGCCCAGTGCTAATGA
GGGACCCACATTATCTTCCAGACTGGACTCTCTGGGGCTGCGCACTGGCT
GATGGGATATGGACATCGCTTTTAAAGTTCATTGATCAAGTTTTACAATT
TCCCCTTCTTCTGATGACCTCATGACTAGTAGCCTTCTATTAGGAAGAAA
AGCTAGCCCTACCCTTCTGTCTGTAAATACAAGAGATAGCCTAGAGGGTC
CTGGACTGGAGCCCACCGTGCTGAAGAATTATAGCTTGAAAGGAAGAGAA
CCAAGAGTCAAGGGCGAAGTGAAACTGGGCATGTTGTCTACGTCTCATTA
CTTTCAAAGCCCAGGGACATCTGGGAAAGCTGTCTGGCTTCCATCTTTGA
TAAACATTAGAATAGGGAACCCAGAGCCATGGCCCAGAGCCTCCCCAGTG
ACTCTTAGGTCTTACATTTGAGAACAGTCTTGCTCTGAGGATGATCTCTC
AATAGAGCGCTACACAAGCCTCAGGTTGCCTCTGACCTGTGCACTATCCA
CTCTACGGTCAGCCAGCCTTTGTCCCTGG

NNNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATTCAGTGAGCGATCC
TGTGGTGAGATTGTGAGGTGGGTCAGTGCATGGAGGTACTCCTCTATTGA
TCTTATCTCACCCCTTATACTCCACCTACTCTCGTATTACTATATCCTGC
CTTCGTCCCTTCCTCTGTTTTTCTCCCTTCCCTTCTTGCTTTTCTTCTTC
CCCCCCTTTCTTTTTCCTTTTTTTTCTTCTTTTACCTTTTCCATCTTTCT
TCCCCCTCTTCTTCTTTCTTTTATTCTTTTTTTTCCCTTTTCTCTCCTCC
TCCCTCCTATCTTCCCCTCTACTTTCTTCTTTACCTCTCTTCCTTCCTTC
TTTCTTTCTTTGTTTCTATAATTTCCTCCCCCCCCTTTTTTTTCCCTTTT
TTTTACTCCCTCCCCTCTTTCTCCTCCCTCTCTATTCTTTCCTTCTTCTC
TCTCCCCCCCTTTTTTCTTCTCCCTTCTTCTTTCTTTCCCCCTTTCTTTT
CTTTCTTTTTATCTTTTCCCCTTCTTTATTTTATTCCCTTTTTCTACCCT
TCTTTTACCCTCCCTTTCCCCTTCCTTCCTTTTTCCCTCTTCCTTATCCC
TTTCCTTTTTTTCCCTTCTTTTCCCTTCCCTTTTTTTTTCTCTTCCCTTT
TTCCTTTTTTCCTTTCTTTATACCCCTTTCCTTTTTTCTCCCCCACCTTG
TCTCTCCACATCCTACTATTTCCCCCCTTTTCCCCCCCCCTTTTTTCTTC
TAATCTCTTCTATATTTTTTTACCCACTTCTCCTTT

Query= MSMg01no199_b12.b1 MSMg01no199_b12.b1 CHROMAT_FILE:
MSMg01no199_b12.b1 PHD_FILE: MSMg01no199_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:32 2005
         (578 letters)



>mm_chr3_51649875_51650854
          Length = 980

 Score =  928 bits (480), Expect = 0.0
 Identities = 547/570 (95%), Gaps = 4/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 12  tgccttggcttccctcagtggactatgattcaggataggtaagccaaataaatagttccc 71
           |||||||| ||||||||||||||  ||||||||||||||||||||||||||| |||||||
Sbjct: 212 tgccttggtttccctcagtggaccgtgattcaggataggtaagccaaataaacagttccc 271

                                                                       
Query: 72  tccccaagtttatttggtcatggtgttttatcacagcaataaaaatcctaaaacagcagg 131
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gccccaagtttatctggtcatggtgttttatcacagcaataaaaatcctaaaacagcagg 331

                                                                       
Query: 132 tacacttgat--gcccagtgctaatgagggacccacattatcttccagactggactctct 189
           ||||||||||  | |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 332 tacacttgattag-ccagtgctaatgagggacccacgttatcttccagactggactctct 390

                                                                       
Query: 190 ggggctgcgcactggctgatgggatatggacatcgcttttaaagttcattgatcaagttt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 391 ggggctgcgcactggctgatgggatatggacatcgcttttaaagttcattggtcaagttt 450

                                                                       
Query: 250 tacaatttccccttcttctgatgacctcatgactagtagccttctattaggaagaaaagc 309
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tacaatttcccgttcttctgatgacctcatgactagtagccttctattaggaagaaaagc 510

                                                                       
Query: 310 tagccctacccttctgtctgtaaatacaagagatagcctagagggtcctggactggagcc 369
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tagccctacccttttgtctgtaaatacaagagatagcctagagggtcctggactggagcc 570

                                                                       
Query: 370 caccgtgctgaagaattatagcttgaaaggaagagaaccaagagtcaagggcgaagtgaa 429
           ||  ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 571 cagggtgctgaagaattatagctcgaaaggaagagaaccaagagtcaagggtgaagtgaa 630

                                                                       
Query: 430 actgggcatgttgtctacgtctcattactttcaaagcccagggacatctgggaaagctgt 489
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 actgggcatgttgtccacatctcattactttcaaagcccagggacatctgggaaagctgt 690

                                                                       
Query: 490 ctggctt-ccatctttgataaacattagaatagggaacccagagccatggcccagagcct 548
           ||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 691 ctggctttccatctttggtaaacattagaataggggacccagagccatggcccagagcct 750

                                         
Query: 549 ccccagtgactcttaggtcttacatttgag 578
           |||||||||||||||| |||||||||||||
Sbjct: 751 ccccagtgactcttagttcttacatttgag 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 980
Length adjustment: 10
Effective length of query: 568
Effective length of database: 970
Effective search space:   550960
Effective search space used:   550960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)