Query= MSMg01no201_l17.b1 MSMg01no201_l17.b1 CHROMAT_FILE:
MSMg01no201_l17.b1 PHD_FILE: MSMg01no201_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:09 2005
(570 letters)
>mm_chr3_143980963_143981935
Length = 973
Score = 849 bits (439), Expect = 0.0
Identities = 479/503 (95%), Gaps = 22/503 (4%)
Strand = Plus / Minus
Query: 75 ctgggagacggtggccagcagtggagtgctgctggcaggctctgagatgggcctggatcg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 ctgggagacggtggccagcagtggagtgctgctggcaggctctgagatgggcctggatcg 914
Query: 135 acagtgcatccttattaatgacttgcaggaggtgatgagcagaacattaattaaacgtgc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 acagtgcatccttattaatgacttgcaggaggtgatgagcagaacattaattaaacgtgc 854
Query: 195 acatgtggccaagtgggaaattggcgacgagaacagcagaggcaggctctattatatcca 254
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 853 acatgtggccaagtgggaaattggcgacgagaacagcagaggcaggcac-ataatatcca 795
Query: 255 ggtacttggttttcagcttctgcgatttggcctgtgagaggtggtttgacttat---ccc 311
||||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct: 794 ggtacttggttttcagc-tctg---------ctgtgagaggtggtttgacttatcccccc 745
Query: 312 ccccccccttagccccctgctgtctccttgc----tcccctgggctccaacaagattttc 367
||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 744 ccccccccttagccccctgctgtctccttgctgttt----tgggctccaacaagattttc 689
Query: 368 acttggtgcaacaggggctgtatctttagagcaggctcataaatccccctccctcagcca 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acttggtgcaacaggggctgtatctttagagcaggctcataaatccccctccctcagcca 629
Query: 428 aacaccacggtgtgtccaagttgccacttctagcctgatgcactgaaaaaggaaccctgc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aacaccacggtgtgtccaagttgccacttctagcctgatgcactgaaaaaggaaccctgc 569
Query: 488 aaaaatgaatatcgatgtagcggaataaagaagcatccaggaggccggttcacaaacacc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaaaatgaatatcgatgtagcggaataaagaagcatccaggaggccggttcacaaacacc 509
Query: 548 ctgccctgcttcacggcctgttt 570
|||||||||||||||||||||||
Sbjct: 508 ctgccctgcttcacggcctgttt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 973
Length adjustment: 10
Effective length of query: 560
Effective length of database: 963
Effective search space: 539280
Effective search space used: 539280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_l17.g1 MSMg01no201_l17.g1 CHROMAT_FILE:
MSMg01no201_l17.g1 PHD_FILE: MSMg01no201_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:09 2005
(328 letters)
>mm_chr3_143954349_143955076
Length = 728
Score = 603 bits (312), Expect = e-177
Identities = 324/328 (98%)
Strand = Plus / Plus
Query: 1 caaggctaactggagttcctcccccattcagagtgctttctggtcaccccggagtacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggctaactggagttcctcccccattcagagtgctttctggtcaccccggagtacata 260
Query: 61 aggctgtggctttcagtgcgagtctcgatgccactctgatcatcctgtgtttttgcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctgtggctttcagtgcgagtctcgatgccactctgatcatcctgtgtttttgcagtc 320
Query: 121 agagatatgttgttgtaagaatcggagcatgctcagaagtgccaaagtatgaagactgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagatatgttgttgtaagaatcggagcatgctcagaagtgccaaagtatgaagactgtc 380
Query: 181 taaaaccacagggaaaattgcagaaagctcgctgttgctgttgtcagaaagccatctatc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaccacagggaaagttgcagaaagctcgctgttgctgttgtcagaaagccatctatc 440
Query: 241 gcttaatccctaagatctgtgatggtttgaatatatttggtccagggagtggcactattt 300
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 441 gcttaatccctaagatctgtgatggtttgaatatatttggcccacagagtggcactattt 500
Query: 301 ggaggtgtggccttgttggagtaggtgt 328
||||||||||||||||||||||||||||
Sbjct: 501 ggaggtgtggccttgttggagtaggtgt 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
