Query= MSMg01no201_l22.b1 MSMg01no201_l22.b1 CHROMAT_FILE:
MSMg01no201_l22.b1 PHD_FILE: MSMg01no201_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:10 2005
(317 letters)
>mm_chr3_131318413_131319128
Length = 716
Score = 543 bits (281), Expect = e-159
Identities = 304/313 (97%), Gaps = 5/313 (1%)
Strand = Plus / Plus
Query: 5 gaattctccatgttcc--ccactcaggatagtctataaggtgagtctctaaggccacttt 62
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatg--ccagccactcaggatagtctataaggtgagtctctaaggccacttt 262
Query: 63 actcagggatcagctatccctcaaaagcagcaattcagtgaagatgctacagtgcctgcc 122
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 actcagggatcagctatccctcaaaagcagcagttcagtgaagatgctacagtgcctgcc 322
Query: 123 acttagcaagtgccagtgctacacagccatacacagtcagtgattcttgtgtatcttcca 182
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 323 acttagcaagtgccagtgctacacagccaaacacagtcagtgattcttgtgtatcttcca 382
Query: 183 accctgctcccctgcccccagtggccccagtgatttctggttcctacattcttttgttcc 242
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 accctgctcccctgcccccagtggccc-agtgatttctggttcctacattcttttgttcc 441
Query: 243 ttttcccctgggaaacttctttgattcataccatgttttgcaaagattcttgggctggta 302
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 442 gtttcccctgggaaacttctttgattcataccgtgttttgcaaagattcttgggctggta 501
Query: 303 cttttctcgattt 315
|||||||||||||
Sbjct: 502 cttttctcgattt 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space: 217756
Effective search space used: 217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_l22.g1 MSMg01no201_l22.g1 CHROMAT_FILE:
MSMg01no201_l22.g1 PHD_FILE: MSMg01no201_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:10 2005
(286 letters)
>mm_chr3_131409077_131409764
Length = 688
Score = 514 bits (266), Expect = e-150
Identities = 281/286 (98%), Gaps = 2/286 (0%)
Strand = Plus / Minus
Query: 3 ataagtcatagagcttcag-gaaaaatatgagaaatatagaagtgcatctgttggaggaa 61
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataagtcatagagcttcagcaaaaaatatgagaaatatagaagtgcatctgttggaggaa 320
Query: 62 agaaaggaagcttgttctaaaagagaaaaagtcataaaag-aaaaaaaataacttggcta 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 319 agaaaggaagcttgttctaaaagagaaaaagtcataaaagaaaaaaaaataacttggcta 260
Query: 121 taaaaaaaagtttgtttcctaatttaaaggcaccataagtaaagctggtgggtaaaaacc 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 taaaaaaaagtctgtttcctaatttaaaggcaccataagtaaagctggtgggtaaaaacc 200
Query: 181 tgactcttggactgagcccagagacccctatggaagggttaggggaaggactgaggagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgactcttggactgagcccagagacccctatggaagggttaggggaaggactgaggagct 140
Query: 241 gaaggggatggcaaccttctgttgttgtaggaagaacaacagactc 286
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 139 gaaggggatggcaaccttctgttgttgtcggaagaacaacagactc 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 688
Length adjustment: 9
Effective length of query: 277
Effective length of database: 679
Effective search space: 188083
Effective search space used: 188083
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
