Query= MSMg01no201_m14.b1 MSMg01no201_m14.b1 CHROMAT_FILE:
MSMg01no201_m14.b1 PHD_FILE: MSMg01no201_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:15 2005
(735 letters)
>mm_chr3_85066307_85067441
Length = 1135
Score = 1274 bits (659), Expect = 0.0
Identities = 713/731 (97%), Gaps = 3/731 (0%)
Strand = Plus / Plus
Query: 5 gaattctcatctgaggaatactgaatgtctgagaagcacctgaaaaaa-tgttcagcatc 63
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 204 gaattctcatctgaggaatactgaatggctgagaagcacctgaaaaaaatgttcagcatc 263
Query: 64 cttaatcatcagggaaacacaaatgaaaataaccctgacactccacctcacaccagtcag 123
||||||||||||||||||||||||||||| |||||||| | ||||| |||||||||||||
Sbjct: 264 cttaatcatcagggaaacacaaatgaaaacaaccctgagattccacttcacaccagtcag 323
Query: 124 aacggctaagatttaaaaacttaggtgacagcagatgctggtgaggatgtggagaaagag 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gacggctaagatttaaaaacttaggtgacagcagatgctggtgaggatgtggagaaagag 383
Query: 184 gaacactactccattgctggtggaattacaagctggttcaaccactctggaaaacagttt 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 384 gaacactactccattgctggtgggattacaagctggttcaaccactctggaaatcagttt 443
Query: 244 ggtgtggttcctcagaaaattggacatagttcttccagaagatccaacaataccactcct 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 ggtgtggttcctcagaaaattggacatagttctaccagaagatccaacaataccactcct 503
Query: 304 gggcatacacccagaagatgttccaacttgtaataaggacacatgctttactatgttcat 363
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 504 gggcatacacccagaagatgttcctacttgtaataaggacacatgctttactatattcat 563
Query: 364 agcagacttatttataatagcaagaagctggaaagaaccctgatgtctatcaacagagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcagacttatttataatagcaagaagctggaaagaaccctgatgtctatcaacagagaa 623
Query: 424 atggatacagaaaatgtagtacatttacacaatggagtattactcaggtattaaaaacaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atggatacagaaaatgtagtacatttacacaatggagtattactcaggtattaaaaacaa 683
Query: 484 tggattcatgaaattcttagacaaatggatggatctggaggatatcatcctaagtgaggt 543
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 684 tggattcatgaaattcttagacaaatggatggatctggaggatatcatactaagtgaggt 743
Query: 544 aacccaatcacaaaaggacacacatgatatcctctcactgataagtggatattagcccag 603
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 744 aacccaatcacaaaaggacacacatgatatgcactcactgataagtggatattagcccag 803
Query: 604 aaac-tcagaatacccaagactagctagtactttcaatgctataatatgaattggagagc 662
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaacgt-agaatacccaagactagctagtactttcaatgctataatatgaattggagagc 862
Query: 663 atctggcataaaccctggctgccatattgagattgccttctggttctggttggttccctg 722
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 863 atctggcataaaccctggctgccatattgagattgccttctggttctgattggttccctg 922
Query: 723 cacatttctac 733
|||||||||||
Sbjct: 923 cacatttctac 933
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space: 815625
Effective search space used: 815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no201_m14.g1 MSMg01no201_m14.g1 CHROMAT_FILE:
MSMg01no201_m14.g1 PHD_FILE: MSMg01no201_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:16 2005
(590 letters)
>mm_chr3_85097332_85098321
Length = 990
Score = 543 bits (281), Expect = e-158
Identities = 299/309 (96%), Gaps = 8/309 (2%)
Strand = Plus / Minus
Query: 1 ccggactaaaattaagtagcaagaataatgtcactgtctggatgctaaattgccttgcg- 59
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 305 ccggactaaaattaagtagcaagaataatgccactgtctggatgctaaattgccttgcgg 246
Query: 60 ---cccccttcccaccagatggattagtctgtcatagctaaacctcctcacacagtcaga 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttt----cttcccaccagatggattagtctgtcatagctaaacctcctcacacagtcaga 190
Query: 117 tatagacaaggtcttttcgaacttgtaacatacatggcctcgagtctaatcttcatagag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tatagacaaggtcttttcgaacttgtaacatacatggcctcgagtctaatcttcatagag 130
Query: 177 tccctatttccatctgaaaacctatctgagaggtctctggtgccgacattccaggcagca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tccctatttccatctgaaaacctatctgagaggtctctggtgccgacattccaggcagca 70
Query: 237 ctccagacttctgatcatccgacaaagtggccaagtaagctgtgtgtgaagagttttagg 296
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 69 ctccagacttctgatcatccgacagagtggccaagtaagctgtgtgtgaagagttttagg 10
Query: 297 gctcctata 305
|||||||||
Sbjct: 9 gctcctata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
