Query= MSMg01no202_d09.b1 MSMg01no202_d09.b1 CHROMAT_FILE:
MSMg01no202_d09.b1 PHD_FILE: MSMg01no202_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:56 2005
(488 letters)
>mm_chr3_83562547_83563437
Length = 891
Score = 849 bits (439), Expect = 0.0
Identities = 475/489 (97%), Gaps = 5/489 (1%)
Strand = Plus / Plus
Query: 1 cacaagtgtgtggagaggtgtgacattctcaggcatatacacaagtgagtgctaactgga 60
|||||||||||||||||||||||||||||| || ||||||| ||| |||||||||||||
Sbjct: 201 cacaagtgtgtggagaggtgtgacattctcgggtgtatacac-agtaagtgctaactgga 259
Query: 61 ccaggcaatgaccacacgcgttcttcagttcttcatggggaaactcaaaacaactcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccaggcaatgaccacacgcgttcttcagttcttcatggggaaactcaaaacaactcagag 319
Query: 121 cttttaaggcagatgcattcctgtgtgcaagcagtttataaagcgggcaaagaaccatct 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 320 cttttaaggcagatgcattcctgtgtgcaagcagtttataaagtgggcaaagaaccatct 379
Query: 181 ccctttggcaggttaagctggtcttacatgaagacaagaaactgacctctgaagacagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccctttggcaggttaagctggtcttacatgaagacaagaaactgacctctgaagacagtt 439
Query: 241 tgtaggcttctctgactttccataaaacttaacctatcaccactcaaatgggaccaacag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtaggtttctctgactttccataaaacttaacctatcaccactcaaatgggaccaacag 499
Query: 301 atgaccggtcttcgctttgtttttgctttttctgagtgacacatattcct----ccccgt 356
|| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 500 ttggccggtcttcgctttgtttttgctttttctgggtgacacatattccttcctccccgt 559
Query: 357 ggagatcttccctccttatctgtttgtaactaaaaaagttccttgtccgcagaaagctgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggagatcttccctccttatctgtttgtaactaaaaaagttccttgtccgcagaaagctgt 619
Query: 417 aacaccttcaactttaagccaaatgcagaagggaagaagttttacttttatctgccaata 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacaccttcaactttaagccaaatgcagaagggaagaagttttacttttatctgccaata 679
Query: 477 ctaagctaa 485
|||||||||
Sbjct: 680 ctaagctaa 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 891
Length adjustment: 10
Effective length of query: 478
Effective length of database: 881
Effective search space: 421118
Effective search space used: 421118
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no202_d09.g1 MSMg01no202_d09.g1 CHROMAT_FILE:
MSMg01no202_d09.g1 PHD_FILE: MSMg01no202_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:56 2005
(519 letters)
>mm_chr3_83751652_83752570
Length = 919
Score = 893 bits (462), Expect = 0.0
Identities = 505/522 (96%), Gaps = 6/522 (1%)
Strand = Plus / Minus
Query: 1 agtaactctctcctaaggatggaggtagggtcttaacagtaacgcccggatggctggggt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 719 agtaactctctcctaaggatggaggtagggtcttaacagtaacgaggggatggctggggt 660
Query: 61 ttggttttgaaatgatacggattaaccctctttcttgagaacaaaacaaaaaactaagtc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttggttttgaaatgataaggattaaccctctttcttgagaacaaaacaaaaaactaagtc 600
Query: 121 caagcagctcttcatttgttcatatgttttgtgagtgtatctggaaatataagtaagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 caagcagctcttcatttgttcatatgttttgtgagtgtatctggaaatataagtaagttt 540
Query: 181 tttgtttgt---tttttatttttttcctcttcctccatgggagagcagaaggtagtgatg 237
||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 539 tttgtttgtttgtttttgtttttttcctcttcctccatgggagggcagaaggtagtgatg 480
Query: 238 aggattgaaacagaattactctttaatatcagggagaagcagccatgctgcccttcctga 297
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||
Sbjct: 479 aggattgaaacagaattactgtttaataccagggagacgcagccatgctgcccttcctga 420
Query: 298 taattgagctgagctgtcatcaaacattgaacgatggctgtagcatctgagagtggtgcg 357
||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 419 taactgagctgagctgtcatcaaacattgaacgacggctgtagcatctgaga---gtgcg 363
Query: 358 caaaggtcagggcccaggttagctctcatgttgtccaaggccatggctgtgcagacttag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caaaggtcagggcccaggttagctctcatgttgtccaaggccatggctgtgcagacttag 303
Query: 418 ttgttacagcctcatgtgtttgggctgccagctggactatcccatggcctgtccagagct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttgttacagcctcatgtgtttgggctgccagctggactatcccatggcctgtccagagct 243
Query: 478 tgtgttcctactgatagggcatgctgacataaaagatttagc 519
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgtgttcctactgatagggcatgctgacataaaagatttagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
