BAC Information

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BAC

Clone NameMSMg01-202I04
Chromosome3 (Build37)
Map Location 135,034,934 - 135,035,239
singlet/doubletsinglet
Overlap gene4933425K02Rik
Upstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638
Downstream geneZcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202I04.T7 (MSMg01no202_i04.b1)MSMg01-202I04.TJ (MSMg01no202_i04.g1)
ACCAG387640AG387641
length714782
length of high quality
(start - end)
311 (45 - 355)163 (77 - 239)
definitionCHROMAT_FILE: MSMg01no202_i04.b1 PHD_FILE: MSMg01no202_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:21 2005CHROMAT_FILE: MSMg01no202_i04.g1 PHD_FILE: MSMg01no202_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAGAATACCTGTAGTGCCTCCCCTCCCACCTCTCATTGGTAAGT
ATATAATCATCTGTATTCTCCGCTAGATAATTTGTAAATTTTGAACATTT
TCTGTTTGAACTATATTATATAATTTTATTTAATAAGGTATCTAACTTCT
AATTATATACATTTACTGTATACGTAAATATAGCTTTCTGTATAGATTTA
TGCTCTACACACAGTCTTTTTAGTCTATTTTTAAAAGTAATTTGAAGATC
CTGAATATATTATTGACATTGGTTTATTATTTAATTCGTTGTAAGCTTAG
TTTAAAATTATTTCTACCCCCCCCACACTTTAGAAAAGGCTTAAGTTTTG
TACATGTCATGGAACTAAAACATAGCACCGCTGCATGCCCTGTGAGTACT
GTGTTAGCTGCATGAGCATCTGCTGTGTCTGAGCATCTTGTATATGTCAG
TCTGACACTCCTGTATCACTTCTTCATCTTAGTGCTCTGTGATCTGCAGG
CGGACAGGAAAGTTAGTGGCAGTATTTTTTTCTGAGGTCTCATATCTTCT
TCCTAAGCCATACGTCTAACCACGCAAAGTATCATCTGAAGAGATTGTGT
CCGTGCCTCTTATCNTGACCGCGACACACCTTTGATTCCCAAATCTCTTC
TATATGTTTGTTGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACGCTGTCTGCCTGGGTGCTAGT
GAGGTCTTCAGAGAGATCTGAGCAGCACTCAGAAATGATGTAAGTTTCAG
ACCAGCCTGGGCCACATAGTGAGACCTTGTCTCAAAAACACACAAACTTC
AGAAGAAAGAGAAATGTGGTGGGTAGGGTTGGGAGGCTAAACATNCCTCC
CCTATCCCATAAATTACAATTTCCATACCTCCTCCCCCTCCCTCTTTTTC
GCATTCACGGCCCCCCTTTTTTTTTTCCCACCGATCCGTAATAAAATAAA
AGGCCCTTTTTTTTTTCCCCCCCCCCCCCCCCCCGTTTTTGTTATGATTA
TTTCTTTCCGTTCTCTCCCCCCCCACAAAAAAAAAACATCCGTTCTGGGG
GGGGGGAAGAAATCTTGCTTATTTATAACCCCCCCCGCTTATTATTATAG
TATTTAACCCCACTCTTATTTTCTTCCCATAACCTTTTTCTCCCGCACCG
TTATCTATTCCTTCCACGCTATATGATCCACCCTCCCTACCGATTTATAA
GTTAACTCTTGTTGTTTTTTCTAGAAATCCCTTCATTTTAATCCGTCTTC
TCCACACACCACCACTAAAATACCATATCTTATTTTAATACCGCTTTCGG
TTCCCCGCTATTTATATTGCCTTTTTGTATTGCTGTTTCTTTTTTCCCCG
TCTCACCTCCCATTATAACATACAAAAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_i04.b1 MSMg01no202_i04.b1 CHROMAT_FILE:
MSMg01no202_i04.b1 PHD_FILE: MSMg01no202_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:21 2005
         (311 letters)



>mm_chr3_135034730_135035439
          Length = 710

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%), Gaps = 1/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattagaatacctgtagtgcctcccctcccacctctcattggtaagtatataatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagaatacctgtagtgcctcccctcccacctctcattggtaagtatataatc 264

                                                                       
Query: 65  atctgtattctccgctagataatttgtaaattttgaacattttctgtttgaactatatta 124
           |||||||||||  | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctgtattctttgtt-gataatttgtaaattttgaacattttctgtttgaactatatta 323

                                                                       
Query: 125 tataattttatttaataaggtatctaacttctaattatatacatttactgtatacgtaaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 324 tataattttatttaataaggtatctaacttctaattatatacatttactgtataagtata 383

                                                                       
Query: 185 tatagctttctgtatagatttatgctctacacacagtctttttagtctatttttaaaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatagctttctgtatagatttatgctctacacacagtctttttagtctatttttaaaagt 443

                                                                       
Query: 245 aatttgaagatcctgaatatattattgacattggtttattatttaattcgttgtaagctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatttgaagatcctgaatatattattgacattggtttattatttaattcgttgtaagctt 503

                  
Query: 305 agtttaa 311
           |||||||
Sbjct: 504 agtttaa 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 710
Length adjustment: 9
Effective length of query: 302
Effective length of database: 701
Effective search space:   211702
Effective search space used:   211702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)