BAC Information

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BAC

Clone NameMSMg01-202I06
Chromosome3 (Build37)
Map Location 121,227,503 - 121,227,813
singlet/doubletsinglet
Overlap geneSlc44a3
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3
Downstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202I06.T7 (MSMg01no202_i06.b1)MSMg01-202I06.TJ (MSMg01no202_i06.g1)
ACCAG387644AG387645
length7131,140
length of high quality
(start - end)
309 (45 - 353)---
definitionCHROMAT_FILE: MSMg01no202_i06.b1 PHD_FILE: MSMg01no202_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:21 2005CHROMAT_FILE: MSMg01no202_i06.g1 PHD_FILE: MSMg01no202_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCAACTATACTCAGAGTTCAAGTGCAGACACACTGTGTCCCAGG
CTCCCGGTTCCTCCTAGGTCCCAACTTATGGGCCAGTACTTGATGCTGCC
TGTACCTCTGCTATACACGGTTAAAAATAAAAGGGTCCCAGTGAGGGACA
AATAAAGAAGGACTATTTACGATACACGATACATATAATAAACAATGGCT
TGAAACGGAGACAACTCAGCCAACAGTAAGGGTCCATGGGATCTTCAGAT
GCTAGTGCTGGGTGGTCGGGATGGCTCTACGGTGAAGAAGGCAGTTGCCA
CAAAGCCTGGTGACGTGAGCTCCCCGTCTGGGACCCACATGATGTGAGGA
GAGAACCCACTCCTGAAAATCTCCTCTTCTATATGTGCACCATGGTGCAC
ATCACACACACACACACACACAATTTTTTAAGACAATGAAAACAAATATA
TAAACTATCAAACAAATGACTTTATGACAAGGCTAATGTACACTTTTCCT
TCTCCAGTTCTTGGTTACTATTTAGAGTGAAACCATCAATATTCACACTT
TCATTGCAACAGTGCTGATAGTCTTTGTTGCTCAAGATTGTGCCACAAAT
ATAGGCTGTGGGTCTGGAGAGAAGGCTTACAGCTTACTTAACCTCTGAGT
ACTTGTTCCTCTT
GGTGGGGAGGGTGAAAATAAAAAACGAAAAAGCGGAGGCGTCGTTTAAAT
TAATAATTTAATATTATATAGTAGTGGGTTGGAGGAAAGGTAAATAGGAA
AAACAACAGGAGAAGAAGAAGAGAATCAATGAATAGTTAAATGTGAGAAA
ATTAGGTGGGTGATAGGAATAAATATTTGTGTGATAATTTATTCTCGACG
TTGTGGTGTGAGAGTGCAGAGAGGTGTGTGTGTAAGTGGGATAGGGAGGA
ATAAGAGGGGAGATTATTTTACTGAATGTGTAATAGGAGAAGGAGAAGAA
GAGAGCGAAGATTTTGTGTGATATGGTTTGGGGTTATGTGGGAGTTGTGT
TATTCTATTATATGGAGAGGTGATTTAGGATTATAAGTTGGGGGAAGGTG
GGAGTGGTGGGAGAGGGGGGGAGTGAGGGAGATGTGAGGAAAGATGTATT
TATGGTAGCTGTATAATTTTTTGTTTTAATAAGAAGAGTATTTTGATTGT
TATAANATATAGAAGAGAGAAAATTGTTTTTGTTTGTTATACCCCCCCCC
CCCCCCCCCGAATGATAAGGGTGGTAGTGGGGAAATGATGAGTGGGGAGT
GGGGGGTGGGGACACACTTTATTGGAGGAGAAATAAGTAATTAGGGGTGG
GGGTGTGTGAGGAGGGGGGGGGTAGATAAAAGGGGTGTTGTTATGAGGAA
GGGTGGGAAGGGGGGAGATGTTTAACGTGAGTAATATATGGTTGAGAGGA
GGAGTAGGAAAATGGAGTAATATCATTGTTGGGTTTGTGTTGGTGAGTGG
GAGTGGTGTATGGAGTAGAGGGTGGGAGAGATAATTAATAGATGGAAATG
TGATAATAAGGAGTTTATTGTAAATAATTATAAATATATTTTATATAAGA
ATGTTATTAAATAATAGGTGTGGAGATGAAGATGAGATGAGGGAGAAAAT
GAAGAGAGGGAAGGAGGGAGTAATGTTGCGAGGATAAAGAAGATGTGTAA
GAGAACGGTTGGGAGAATATACGGCGCGGATATATATATTGGGAGGGTTG
TTGAAGAGTGAGCGCGTGTAAAAATGGGGATGGTGGGTAGATAGAAGTAT
ATGGGTTCAGTGTGGAAGTAGGATTGGCGAATATTGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_i06.b1 MSMg01no202_i06.b1 CHROMAT_FILE:
MSMg01no202_i06.b1 PHD_FILE: MSMg01no202_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:21 2005
         (309 letters)



>mm_chr3_121227299_121228013
          Length = 715

 Score =  534 bits (276), Expect = e-156
 Identities = 300/314 (95%), Gaps = 12/314 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcaactatactcagagttcaagtgcagacacactgtgtcccaggctcccggt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattccttcaactacactcagagttcaagtgcagacacactgtgtcccaggctcccggt 456

                                                                       
Query: 65  tcctcctaggtcccaa---cttatgggccagtacttgatgctgcctgtacctctgctata 121
           |||||| ||||   ||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcctccaaggt---aagagcttatgggccagtacttgatgctgcctgtacctctgctata 399

                                                                       
Query: 122 cacggttaaaaataaaag------ggtcccagtgagggacaaataaagaaggactattta 175
           ||||||||||||||||||      ||||||||||||||||||||||||||||||||||||
Sbjct: 398 cacggttaaaaataaaagggtgcaggtcccagtgagggacaaataaagaaggactattta 339

                                                                       
Query: 176 cgatacacgatacatataataaacaatggcttgaaacggagacaactcagccaacagtaa 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cgatacacgatacatataataaacaatggcttgaaacggagacaactcagccaacagtaa 279

                                                                       
Query: 236 gggtccatgggatcttcagatgctagtgctgggtggtcgggatggctctacggtgaagaa 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gggtccatgggatcttcagatgctagtgctgggtggtcgggatggctctacggtgaagaa 219

                         
Query: 296 ggcagttgccacaa 309
           ||||||||||||||
Sbjct: 218 ggcagttgccacaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 715
Length adjustment: 9
Effective length of query: 300
Effective length of database: 706
Effective search space:   211800
Effective search space used:   211800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)