Query= MSMg01no203_a09.b1 MSMg01no203_a09.b1 CHROMAT_FILE:
MSMg01no203_a09.b1 PHD_FILE: MSMg01no203_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:03 2005
(290 letters)
>mm_chr3_130936737_130937426
Length = 690
Score = 514 bits (266), Expect = e-150
Identities = 284/290 (97%)
Strand = Plus / Plus
Query: 1 aaccccatgactgcaactagtcaaaagattacttcagagagactgcaagttaggccccac 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 201 aaccccatgactgcaactagtcaaaagattacttcagagagactgcaagggagggcccac 260
Query: 61 tgagccgcccctggcaagcctcggtaccacctgcccagggcttgctcatccttgtcccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagccgcccctggcaagcctcggtaccacctgcccagggcttgctcatccttgtcccat 320
Query: 121 ggctggctggaggtgttgctgggggaagtgtcacttgtatttgtaaaatccttctccggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctggctggaggtgttgctgggggaagtgtcacttgtatttgtaaaatccttctccggt 380
Query: 181 cttcttgcccagcttcttctgggccaccagattattcatggaaggactgggctgaaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcttgcccagcttcttctgggccaccagattattcatggaaggactgggctgaaataa 440
Query: 241 ggggttctctggctctttttcatgccaccctgttgagagaaaggtcacag 290
||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 441 ggggttctctggctccatttcatgccaccctgttgagagaaagggcacag 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no203_a09.g1 MSMg01no203_a09.g1 CHROMAT_FILE:
MSMg01no203_a09.g1 PHD_FILE: MSMg01no203_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:03 2005
(253 letters)
>mm_chr3_131039093_131039745
Length = 653
Score = 383 bits (198), Expect = e-111
Identities = 234/250 (93%), Gaps = 7/250 (2%)
Strand = Plus / Minus
Query: 1 tctggctaagagggatgttttactaggagaggagaccacacaggcgctccatcatctttc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 549 tctggctaagagggatgttttactaggagaggagaccacacaggcgcttcatcatctttc 490
Query: 61 ttaggtttacctttgtgcccacatccttagtccctctctggcacaaaatgacttagaggt 120
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 489 ttaggtttacctttgtgcccacatccttagtccctttct-------aatgacttagaggt 437
Query: 121 actttagcttgtaaatcttttttggagatgggagtccagccttactatgcaattatggca 180
||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| |
Sbjct: 436 actttagcttgtaaatcttttttggagatgggagtccagtcttactgtggaattatggga 377
Query: 181 taggcagctcacaggccttaaaatgtaaaactgaggcgtatttttcaattccactgtgta 240
|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 376 taggtagctcacaggccttaaaatgtaaaactgaggtgtattttttaattccactgtgta 317
Query: 241 cactattttc 250
||||||||||
Sbjct: 316 cactattttc 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space: 157136
Effective search space used: 157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
