CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCAAAATGAAGTATCTTCAGTCATCCCTATTTTTTTATATCTT
TATTGTCTTTATGTGCTTCAAAGAACTCATATTCTTTTGGGAAAGAAATA
GGACTGTTCTTCAGACTAAGGGAGTGAAGGGGGCTTGGGTTAGAAGGAGC
TTCGTCAAAGGGGGAAGACAGCTGACGCGTAAGTCTACGGTTTATCTTCA
GTAGTGGTGGTCAGGCAACCTACATATTTGTGCATTACTTTTCCTTTGTT
CTTGTATGTGTGTGCCTTCATGAGTATTTTAGCCTTTGTTAATTATAAAA
TCATCTCACAGTCACGAAACCATGCACATAGGAATACACAACAAAACAAA
ATCAAACAAACCCCCCACTAACGAGCCCGTTATTTGCATATGTCATCATA
CACAGTTAGTTCCCCCAACCCCTTTACATTTGGAAATAGCATGTATTTAT
AGAGTATATAGAACATAAGGAGACTTAGGATATAACAATATATAGATGTG
TTGGTGTTAATTTCCACAAGAGATTATACTTTTTAAATAGAAGACCTTTT
CTTACAGTAGACCCAGCAGGAGAATAAAGTCAGGAAGGAGGTGTGAGTAT
AAAGCAAGTGTGCATCTCTTTAGTCTTTTTCTCATTTTATGCTTTCTTCT
CGTTTCTNACCGCTTATCTATTTTTTTCTTCCTTTTG

GTGAGAGGGAAGGAGAGGAGGGGGGNNGCCNCCTAATTNNNCCCGGAGAA
AGGGAAGCGGGGGNNNNNGGGATGCCAAAAAGGGGNNNNNNNNGNTTTGC
GAAAAAGGGGGGGGGNAAGGNAAAAAAGNAGGGAGAGGGGGGTTTTTAAC
CCGGAAAAAAAAGAGGGGTTGGGGGGGGGGGAGAGAAAAGGAGAAAAAAA
GGGGGGGGGAAAAAAAAAAAAAGGGGAAGGAGGGGGGGGGAAAAGGGGGG
GTTAAAATAANAAAATAAAATGGGGAAAATTTTATTAAAATGAGAAAGGT
AAGGGGGATATGGGGGGGAGGAAANAAAAAGGAGAAAAGGTGTTTTTTTT
TTGGGGGGGGGGGGAAAGANGGGGGGGAGGGTTGTTGGGGGGGGGGGGGG
AGGAAAGGGGAGAGGAAAAAGAAGGGGGGGGGGATAGGGGGGTGGGGGAG
AAAAAAAAAAAAAAAGGGGGGGGGGGGGGGAGAAAGGGTGGATAGGGAGA
GGGGGAAAGGAGAGAGGAAGGGGGAGGAGGGGGGAGGAAGAAGAGAGGGT
AGGGAGAGGGAGGAGAGGAAAGAAAAGGGGAAGGAGAAAGAAGGAAGAGA
GGAGGAAAGGGGGAGTGGGGGGGAAAGTGGGGATAGAGAAAGGAGGAGGG
GGGGGGGGGGAGGGGGGGGGGGGAGAAAGGGAGGGAGGGGGAGGGAGTTG
TATGAGGGGGAGGAGAGAGAAAGTGAGAAGGGGGGGGGGGGTGTGGGGGA
GGGGGAGGG

Query= MSMg01no203_b02.b1 MSMg01no203_b02.b1 CHROMAT_FILE:
MSMg01no203_b02.b1 PHD_FILE: MSMg01no203_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:06 2005
         (541 letters)



>mm_chr3_57308830_57309770
          Length = 941

 Score =  978 bits (506), Expect = 0.0
 Identities = 530/538 (98%), Gaps = 2/538 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcaaaatgaagtatcttcagtcatccctatttttttatatctttattgtctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattctttcaaaatgaagtatcttcagtcatccctatttttttatatctttattgtctt 682

                                                                       
Query: 65  tatgtgcttcaaagaactcatattcttttgggaaagaaataggactgttcttcagactaa 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgtgcttcaaagaacttatattcttttgggaaagaaataggactgttcttcagactaa 622

                                                                       
Query: 125 gggagtgaagggggcttgggttagaaggagcttcgtcaaagggggaagacagctgacgcg 184
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggagtgaagggggtttgggttagaaggagcttcgtcaaagggggaagacagctgacgcg 562

                                                                       
Query: 185 taagtctacggtttatcttcagtagtgg-tggtcaggcaacctacatatttgtgcattac 243
           |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct: 561 taagtctacggtttatcttcagtagtggct-gtcaggcaacctacatatttgcgcattac 503

                                                                       
Query: 244 ttttcctttgttcttgtatgtgtgtgccttcatgagtattttagcctttgttaattataa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttttcctttgttcttgtatgtgtgtgccttcatgagtattttagcctttgttaattataa 443

                                                                       
Query: 304 aatcatctcacagtcacgaaaccatgcacataggaatacacaacaaaacaaaatcaaaca 363
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 442 aatcatctcacagtcacaaaaccatgtacataggaatacacaacaaaacaaaatcaaaca 383

                                                                       
Query: 364 aaccccccactaacgagcccgttatttgcatatgtcatcatacacagttagttcccccaa 423
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaccccccactaatgagcccgttatttgcatatgtcatcatacacagttagttcccccaa 323

                                                                       
Query: 424 cccctttacatttggaaatagcatgtatttatagagtatatagaacataaggagacttag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cccctttacatttggaaatagcatgtatttatagagtatatagaacataaggagacttag 263

                                                                     
Query: 484 gatataacaatatatagatgtgttggtgttaatttccacaagagattatactttttaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatataacaatatatagatgtgttggtgttaatttccacaagagattatactttttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)