BAC Information

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BAC

Clone NameMSMg01-203L11
Chromosome3 (Build37)
Map Location 77,571,411 - 77,708,144
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203L11.T7 (MSMg01no203_l11.b1)MSMg01-203L11.TJ (MSMg01no203_l11.g1)
ACCAG388376AG388377
length751751
length of high quality
(start - end)		701 (46 - 746)595 (77 - 671)
definitionCHROMAT_FILE: MSMg01no203_l11.b1 PHD_FILE: MSMg01no203_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:58 2005CHROMAT_FILE: MSMg01no203_l11.g1 PHD_FILE: MSMg01no203_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,571,411 - 77,572,107)(77,707,550 - 77,708,144)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGATTCTCTCCGAGTCTTTCTGACATTTCATAAGACAAGAAAC
TGTACTCAATCTGCTTATTCATTATTCTTCTCAAGTATGAAACGAGAAGT
TGGAAGTCATTAGTTCAGGTAGGTATTTTTGATGATTATTGGTCTTCTAG
AATCATAGTTGCTTACATTCAGACCACTGAGAAACTAGAAAATTTCTGCT
ATTCTGAAGAATTCACATAACTGTCCTCGTCATTTAGGGATGATCTACTA
TGTGAGTCATTGCAGTCTGCATTCCAAAGAGACATAAGAATTAGGACAAT
TACACTTAATTAGTTCATGGACCCAAATAATGAGTCAATGATTTTTAGCA
AATCATTCTAAGAGCAATTCTATGGAATAAGATATAGATAGAAAATAGAA
TAATAATACTTTCCTTCACTTTTTGGAACATGGATTTGAAACAAAGAACT
GGACCATTCCAAGAATAAGAAGAGAATCAGAAAGATAAACACCAGTGCCT
TTCACAGTTAAACTACACGTGGAAGTCCGTGTGTGTCTGTGCATCATTGT
CCCCTGTCAGACATGCAAAACTGCTGTACATTTCAACATTTCCTAATTTT
ATCACATGAATTATTTCTAAGGAATGATGACTTCAGTGAAACAAAGCATA
AAAGAGAATATAAGAAAAACACTCATTCTCATGACTATTTCTCAAGAATT
N

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTGATTTCATTAATGTTTA
CTATAAAATAGGGTCTTCATTCATAAGCTGAGAACAGTGAACCAGGGATA
TAGGTAATACAGAGGTATATTGGGAAGAACTGATAAGATAATGAATAGGG
CTATAAAAACATGAGAAAGCAAGGATTGGAGAAATAGAAATCATTGCCAT
GTATATAATGTTGACATTAATCTCATTAATCTGAAATGAGACTTATCTCA
GGGATTAGATAATAGTAGCTATTGGGTTAATAACGGGGATTAGCGTTTAC
AGACAGCCCTTTCCAAAAAGTCTGCCTCTAACCAGCTGACCAAAGCAGAC
TTCACATGTCTAGGTATTATTGCAGAATGATTTCTGGAGGAAGATGTGGT
GAGGTACAGTCCTACTGCAGCCTATGGAGCCATTATTACCATTTGCATAC
AATGGAGTTGATGCATGATGGTGTCATAAAACCACATCATTCTATCTAGT
GCTCTGTATATTGTGCAGTTTTACACACGTACTCAAATTCTTAAAATCTA
AATCCATGTAGAAATTATTCTTACATCATTTGTGTTTTAAATATATTTAT
GTCAGACAATGTTCTTGTGTCAATAAAGTTTTCCAAGGTTTTGCTTTATT
CATGATACTTAAAATTGTGTGATGATAATATTTCAAGTGCTTATTAATTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_l11.b1 MSMg01no203_l11.b1 CHROMAT_FILE:
MSMg01no203_l11.b1 PHD_FILE: MSMg01no203_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:58 2005
         (701 letters)



>mm_chr3_77571207_77572307
          Length = 1101

 Score = 1294 bits (669), Expect = 0.0
 Identities = 690/697 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggattctctccgagtctttctgacatttcataagacaagaaactgtactcaa 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggattctctaagagtctttctgacatttcataagacaagaaactgtactcaa 264

                                                                       
Query: 65  tctgcttattcattattcttctcaagtatgaaacgagaagttggaagtcattagttcagg 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgcttactcattattcttctcaagtatgaaacgagaagttggaagtcattagttcagg 324

                                                                       
Query: 125 taggtatttttgatgattattggtcttctagaatcatagttgcttacattcagaccactg 184
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggtacctttgatgattattggtcttctagaatcatagttgcttacattcagaccactg 384

                                                                       
Query: 185 agaaactagaaaatttctgctattctgaagaattcacataactgtcctcgtcatttaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaactagaaaatttctgctattctgaagaattcacataactgtcctcgtcatttaggg 444

                                                                       
Query: 245 atgatctactatgtgagtcattgcagtctgcattccaaagagacataagaattaggacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgatctactatgtgagtcattgcagtctgcattccaaagagacataagaattaggacaa 504

                                                                       
Query: 305 ttacacttaattagttcatggacccaaataatgagtcaatgatttttagcaaatcattct 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacaattaattagttcatggacccaaataatgagtcaatgatttttagcaaatcattct 564

                                                                       
Query: 365 aagagcaattctatggaataagatatagatagaaaatagaataataatactttccttcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagagcaattctatggaataagatatagatagaaaatagaataataatactttccttcac 624

                                                                       
Query: 425 tttttggaacatggatttgaaacaaagaactggaccattccaagaataagaagagaatca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttttggaacatggatttgaaacaaagaactggaccattccaagaataagaagagaatca 684

                                                                       
Query: 485 gaaagataaacaccagtgcctttcacagttaaactacacgtggaagtccgtgtgtgtctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaagataaacaccagtgcctttcacagttaaactacacgtggaagtccgtgtgtgtctg 744

                                                                       
Query: 545 tgcatcattgtcccctgtcagacatgcaaaactgctgtacatttcaacatttcctaattt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgcatcattgtcccctgtcagacatgcaaaactgctgtacatttcaacatttcctaattt 804

                                                                       
Query: 605 tatcacatgaattatttctaaggaatgatgacttcagtgaaacaaagcataaaagagaat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatcacatgaattatttctaaggaatgatgacttcagtgaaacaaagcataaaagagaat 864

                                                
Query: 665 ataagaaaaacactcattctcatgactatttctcaag 701
           ||||||||||||| |||||||||||||||||||||||
Sbjct: 865 ataagaaaaacacacattctcatgactatttctcaag 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no203_l11.g1 MSMg01no203_l11.g1 CHROMAT_FILE:
MSMg01no203_l11.g1 PHD_FILE: MSMg01no203_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:58 2005
         (595 letters)



>mm_chr3_77707350_77708344
          Length = 995

 Score = 1135 bits (587), Expect = 0.0
 Identities = 593/595 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtgatttcattaatgtttactataaaatagggtcttcattcataagctgagaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 actatgtgatttcattaatgtttactataaaatagggtcttcattcataagctgagaaca 736

                                                                       
Query: 61  gtgaaccagggatataggtaatacagaggtatattgggaagaactgataagataatgaat 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtgaaacagggatataggtaatacagaggtatattgggaagaactgataagataatgaat 676

                                                                       
Query: 121 agggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtatat 616

                                                                       
Query: 181 aatgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aatgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatagt 556

                                                                       
Query: 241 agctattgggttaataacggggattagcgtttacagacagccctttccaaaaagtctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agctattgggttaataacggggattagcgtttacagacagccctttccaaaaagtctgcc 496

                                                                       
Query: 301 tctaaccagctgaccaaagcagacttcacatgtctaggtattattgcagaatgatttctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctaaccagctgaccaaagcagacttcacatgtctaggtattattgcagaatgatttctg 436

                                                                       
Query: 361 gaggaagatgtggtgaggtacagtcctactgcagcctatggagccattattaccatttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gaggaagatgtggtgaggtacagtcctactgcagcctatggagccattattaccatttgc 376

                                                                       
Query: 421 atacaatggagttgatgcatgatggtgtcataaaaccacatcattctatctagtgctctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atacaatggagttgatgcatgatggtgtcataaaaccacatcattctatctagtgctctg 316

                                                                       
Query: 481 tatattgtgcagttttacacacgtactcaaattcttaaaatctaaatccatgtagaaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tatattgtgcagttttacacacgtactcaaattcttaaaatctaaatccatgtagaaatt 256

                                                                  
Query: 541 attcttacatcatttgtgttttaaatatatttatgtcagacaatgttcttgtgtc 595
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attctcacatcatttgtgttttaaatatatttatgtcagacaatgttcttgtgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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