Query= MSMg01no203_n15.b1 MSMg01no203_n15.b1 CHROMAT_FILE:
MSMg01no203_n15.b1 PHD_FILE: MSMg01no203_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:09 2005
(195 letters)
>mm_chr3_33040344_33040938
Length = 595
Score = 358 bits (185), Expect = e-103
Identities = 191/193 (98%)
Strand = Plus / Minus
Query: 1 attatgtcacatttgacagataatgactagtataatttttaaaatatgtagcaaatacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 attatgtcacatttgacagataatgactagtataatttttaaaatatgtagcaaatacag 334
Query: 61 tctgcctgtcttgaaagtttaaaatcaaaggcactctcccactactgaaaaaaataaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tctgcctgtcttgaaagtttaaaatcaaaggcactctcccactactgaaaaaaataaagc 274
Query: 121 cagcaaagtattgatttaattggatgctttattttcacccaggaatgatatttaaacttt 180
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cagcaaaggactgatttaattggatgctttattttcacccaggaatgatatttaaacttt 214
Query: 181 cattctctgtatt 193
|||||||||||||
Sbjct: 213 cattctctgtatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space: 109769
Effective search space used: 109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no203_n15.g1 MSMg01no203_n15.g1 CHROMAT_FILE:
MSMg01no203_n15.g1 PHD_FILE: MSMg01no203_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:10 2005
(554 letters)
>mm_chr3_32902825_32903779
Length = 955
Score = 1040 bits (538), Expect = 0.0
Identities = 551/556 (99%), Gaps = 3/556 (0%)
Strand = Plus / Plus
Query: 1 attaacacgtttcccagccaaatacatggaagtgtatacaatcagttattccaagcaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 attaacacgtttcccagccaaatacatggaagtgtatacaatcagttattctaagcaccg 260
Query: 61 agacagctatggggtgagaacacactttgcaatgcaaagtttggaaaaacatttcaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacagctatggggtgagaacacactttgcaatgcaaagtttggaaaaacatttcaaact 320
Query: 121 ttctgtgcaaaactcaaataaaatatttacggtgcagctcctgctagagcagacggattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgtgcaaaactcaaataaaatatttacggtgcagctcctgctagagcagacggattt 380
Query: 181 cctgagattcacttttattacctgtgctggagctacaagttccaactcggaagccgactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgagattcacttttattacctgtgctggagctacaagttccaactcggaagccgactc 440
Query: 241 agagttgagggcgcttttcccagtactcagctctggctgagatctgtgttctgcggacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagttgagggcgcttttcccagtactcagctctggctgagatctgtgttctgcggacct 500
Query: 301 gcaaggagagatgagggacactcacgtacagcaagaacaagcccagccagcagcccagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaggagagatgagggacactcacgtacagcaagaacaagcccagccagcagcccagcc 560
Query: 361 aggaaccagaaacaaacttctgtaagtttcctcctccataactgccacttccagaatcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaaccagaaacaaacttctgtaagtttcctcctccataactgccacttccagaatcta 620
Query: 421 aaaaaacctgacagct--gttttttctttgtagtttagagtccagttgaattgtgggcaa 478
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaacctgacagctctgttttttctttgtagtttagagtccagttgaattgtgggcaa 680
Query: 479 agaggaaatgaacaggacacttttttttcttatacaggaaattttatattttgaaaaaag 538
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 agaggaaatgaacgggacacttttttt-cttatacaggaaattttatattttgaaaaaag 739
Query: 539 tgttctgttcttgttg 554
||||||||||||||||
Sbjct: 740 tgttctgttcttgttg 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
