BAC Information

Click to search

BAC

Clone NameMSMg01-204L15
Chromosome3 (Build37)
Map Location 148,979,700 - 149,059,180
singlet/doubletdoublet
Overlap geneEG381483
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893
Downstream geneLOC100040620, LOC100040633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204L15.T7 (MSMg01no204_l15.b1)MSMg01-204L15.TJ (MSMg01no204_l15.g1)
ACCAG388988AG388989
length749800
length of high quality
(start - end)		374 (46 - 419)167 (77 - 243)
definitionCHROMAT_FILE: MSMg01no204_l15.b1 PHD_FILE: MSMg01no204_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:22 2005CHROMAT_FILE: MSMg01no204_l15.g1 PHD_FILE: MSMg01no204_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,058,813 - 149,059,180)(148,979,700 - 148,979,863)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAGAATTTTCCTCTAGGTATCCTAAAGGGATACGTACTTTATC
TTTCCCTGATTTTTTATATTATGCCCAATTATAACGCTCTTGTTATAAAC
AAGACATTGAAATGAGTGCAGTTCAATTCGTAGTAAAATTAAAAATCCTC
CCAAAGACAGCCTGTTCAGGGGTCCACCTCATAAAGACCCCATCGGTCCT
TGGACTTCTCTCATTGCCCCTTAACGGAATCAATGCTACAATTTAGCTAC
AATTTTTATGTTTTCGGAGATACATTCCCTATACATAATGCTCTCTCCAC
TTCTGGACTGATCATGTTCTTCCATGCCAATGCTTTCTCTAGTAATTTTT
TAAGTATCAGTAGACACCGCGCGAGAATGAAAGCATCTACAGAACCTAGG
TGGGAGGTGCACTGTGCTGTCTCTGGGGGACTTTGGTATGGGATCCTCTG
CTTCCATTAAGTTCCTTCGCTGACACCATGGGAGTCTGGCCTTGACATTT
TATGTTGGGAAGGGTTGTTAGTTTGCCTTTTCCATTTTTCCCTTTTCCTT
TTTTCCTCTTTTCATATTTTTCCTTATACGCATTTTTCCCTTTTATCTCT
TTTTACCTTTTTTTTCTTTTTTCTTTATTTCCTTTATTACCACTTATCCC
TTATACCATTTCTCTCCTGTTATTTATCTTTTTCTTTCTTTATTATATT

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGACCAGAAAATTTGAGATTTC
AACATAAGTATGATATGATACGTTCAACGTGAATTGATAAGTAAGGACTT
TCTAGGTGTGCACACAAGGTAGAATCAGATGGGTGCACGAGGCAGAAAGG
TTTGGTCTTAGAATGGTGGGTAAGTGGGGACTGGAGATGTNNCTCNNNTC
TGCNCGTGCTGCCTTCTTCGCTCTTGGTCCCGAGTTCTTTCTTCCGATCC
GCTTCCTCTGTCCCCTCTTGCTGTTTGTCTGTCTTCTTCGTCCTCTGGAG
GNTGGGTGGTTTTTTTTTTTTCCCCCCCCCCCCCTCTATTTATTTCCTTA
TTGTATTCCTGTTTATACCCCACACCCTGTTTTAAAAAAATTTNATTCGG
GTGGGGCTCCTTTCTCCCTCCTCTATACTATTATCGTTGTCCCACTACTC
TCTCTCTTTTCTTTCCCCCCACTTTCACCCCCGTATTACATCCTTATTCT
TACCTTCTTCACATCTTTCCCTACCTACTCTTTCTATTCTCTACTTTATT
TACTTACAACTTTCCTAATTATCTCTATTTCCTCACCCCTTTAATCTCCT
TATTTGCTCTCTTCACTTTTTCTTCTCTTTTTCTTCTATCTCTTCTTTTA
CATTACTATTCCTGATATATTGTTTATTATCCCACTCTCCTTGTCCCATC
CCTCCCTTCCTCTTCCCTTTTCTTCTCTGTCTTTCCCACTTCCTTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_l15.b1 MSMg01no204_l15.b1 CHROMAT_FILE:
MSMg01no204_l15.b1 PHD_FILE: MSMg01no204_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:22 2005
         (374 letters)



>mm_chr3_149058609_149059382
          Length = 774

 Score =  619 bits (320), Expect = 0.0
 Identities = 356/368 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattagaattttcctctaggtatcctaaagggatacgtactttatctttccctga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattcattagaattttcctctaggtatcctaaagggatacgtactttatctttccctga 513

                                                                       
Query: 65  ttttttatattatgcccaattataacgctcttgttataaacaagacattgaaatgagtgc 124
           |||||||||| |||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttttttatataatgaaaaattataacgctcttgttataaacaagacattgaaatgagtgc 453

                                                                       
Query: 125 agttcaattcgtagtaaaattaaaaatcctcccaaagacagcctgttcaggggtccacct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 452 agttcaattcgtagtaaaattaaaaatcctcccaaagacagcctgttcaggggtccacgt 393

                                                                       
Query: 185 cataaagaccccatcggtccttggacttctctcattgccccttaacggaatcaatgctac 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 392 cataaagaccccatcggtccttggacttctctcattgccccttcacggaatcactgctac 333

                                                                       
Query: 245 aatttagctacaatttttatgttttcggagatacattccctatacataatgctctctcca 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aatttaggtacaatttttatgttttcggagatacattccctatacataatgctctctcca 273

                                                                       
Query: 305 cttctggactgatcatgttcttccatgccaatgctttctctagtaattttttaagtatca 364
           |||||||||||| |||| |||||||||  |||||||||||||||||||||||||||||||
Sbjct: 272 cttctggactgaccatggtcttccatggtaatgctttctctagtaattttttaagtatca 213

                   
Query: 365 gtagacac 372
           ||||||||
Sbjct: 212 gtagacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no204_l15.g1 MSMg01no204_l15.g1 CHROMAT_FILE:
MSMg01no204_l15.g1 PHD_FILE: MSMg01no204_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:22 2005
         (167 letters)



>mm_chr3_148979500_148980066
          Length = 567

 Score =  294 bits (152), Expect = 2e-84
 Identities = 161/164 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaccagaaaatttgagatttcaacataagtatgatatgatacgttcaacgtgaattg 60
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agggaccagaaaatttgagaattcaacataagtatgatatgatatgttcaacgtgaattg 260

                                                                       
Query: 61  ataagtaaggactttctaggtgtgcacacaaggtagaatcagatgggtgcacgaggcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagtaaggactttctaggtgtgcacacaaggtagaatcagatgggtgcacgaggcaga 320

                                                       
Query: 121 aaggtttggtcttagaatggtgggtaagtggggactggagatgt 164
           ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 aaggtttggtcttagaatggtggctaagtggggactggagatgt 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |