Query= MSMg01no206_c08.b1 MSMg01no206_c08.b1 CHROMAT_FILE:
MSMg01no206_c08.b1 PHD_FILE: MSMg01no206_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:13 2005
(679 letters)
>mm_chr3_154790052_154791130
Length = 1079
Score = 1176 bits (608), Expect = 0.0
Identities = 657/676 (97%), Gaps = 5/676 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacaggtcaacttggcctttgattacaaaggaaagtgttcagtattagcgaaag 63
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 ggaattcacggggcaatttggcctttgattacaaaggaaagtgttcagtattagcgaaag 940
Query: 64 aaatgccagcagcaccagcaaagggaaggagcacattgatgatgctgtgtctctcatcac 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 939 aaatgccagcagcaccagcaaagggaaggagcacattgatgatgctgtgtctctcaggac 880
Query: 124 agcagcatgtgactgcacgaaaagactgctgctgtatgaatggagaagtgaaagggatta 183
|||||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||
Sbjct: 879 agcagcatgtgactgcacgaaaaggctgctgctgtatgaatgggggagtgaaaggaatta 820
Query: 184 gacaaaatgcagcaggcaccatgtagttaatagccttaggaaacagatagacataaatca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 819 gacaaaatgcagcaggcaccatgtagttaatagccttaggaaacagatagacataaacca 760
Query: 244 agccaatctcatacaaatgagttgctagacaccaacaacacccatcccatgtgacaaaaa 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agccaatctcatacaaatgagttgctagacaccaacaacacccatcccatgtgacaa--- 703
Query: 304 ataaaataaaataaaataaaataaaatcatttgttaagatgataaatcaactgggaaatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 --aaaataaaataaaataaaataaaatcatttgttaagatgataaatcaactgggaaatt 645
Query: 364 tatccttaccaatgccagaaacaaaacagtccaaataatgcagcattcctacatcataaa 423
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 644 tatccttagtaatgccagaaacaaaacagtccaaataatgcagcattcctacgtcataaa 585
Query: 424 tgtgctccatttaatactccactcttgatgttttagtctaccaattttttaggtataaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tgtgctccatttaatactccactcttgatgttttagtctaccaattttttaggtataaga 525
Query: 484 agacccacaaagtcaactaaactgggaccatgtggtctcactgaggagaacccaacaacc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agacccacaaagtcaactaaactgggaccatgtggtctcactgaggagaacccaacaacc 465
Query: 544 agcgagcatgcaggagctggaactaaaccccctacacagttgttgcaagtgtgcagcttg 603
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agtgagcatgcaggagctggaactaaaccccctacacagttgttgcaagtgtgcagcttg 405
Query: 604 aacttcatgtgggtccgttggatccccttcctagactgcctggttgggcctcaaagggaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aacttcatgtgggtccgttggatccccttcctagactgcctggttgggcctcaaagggaa 345
Query: 664 agaatgtgcctaacca 679
||||||||||||||||
Sbjct: 344 agaatgtgcctaacca 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_c08.g1 MSMg01no206_c08.g1 CHROMAT_FILE:
MSMg01no206_c08.g1 PHD_FILE: MSMg01no206_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:13 2005
(644 letters)
>mm_chr3_154729209_154730252
Length = 1044
Score = 1137 bits (588), Expect = 0.0
Identities = 630/644 (97%)
Strand = Plus / Plus
Query: 1 ttttaaaatttaatttgattgtgtgtgggtatgctcatgtgtttttccgtctgcatgcgt 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 201 ttttaaaatttaatttgattgtgtgtgggtatgctcatgtgtttttatgtctgcatgtgt 260
Query: 61 gtgggtatgtatgagctatgttatctgtgtactacagcatgtatgtagaggtcaaaggat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagtatgtatgagctatgttatctgtgtactacagcatgtatgtagaggtcaaaggat 320
Query: 121 gactgcggtggtttaaatagaaatgaccccatatattcatgtgtttgaatgcttgaccca 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgcagtggtttaaatagaaatgaccccatatattcatgtgtttgaatgcttgaccca 380
Query: 181 tagggattagcactattaggaggtgtggctttgttggaggaagtgtattactatgggcat 240
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tagggaatagcactattaggaggtgtggctttgttggaggaagtgtgttactatgggcat 440
Query: 241 gagttttaaggtctcctaagctcaagctgtgcccggtatgggacacagttcccttctgtt 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gagttttaaggtctcctaagctcaagctgtgcccggtatgggatacagttcccttctgtt 500
Query: 301 gcttgtggatcaggatgtaaaattctcagctccttctccaactaagacagacattagtac 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctgtggatcaggatgtaaaattctcagctccttctccaactaagacagacattagtac 560
Query: 361 caagagtggggtattgaagctatagttctgacaatgttctcatgtagagaaatgaggatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagagtggggtattgaagctatagttctgacaatgttctcatgtagagaaatgaggatt 620
Query: 421 ttggaactttggattaggtaaacagtacaatgtttaaaaaagagtataatgggccatcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggaactttggattaggtaaacagtacaatgtttaaaaaagagtataatgggccatcct 680
Query: 481 tgcaaggacatggaagatggcatttagggtgatttcggctgtggggggcttgctcaagag 540
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 681 tgcaaggacatggaagatggcatttagggtgatttcggctgtgggggactcgctcaagag 740
Query: 541 gtttcacaggagaagaattttaatatgttgcttatagatagttcttgtgatattttggta 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 gtttcacaggagaagaattttaatatgttgcttagagatagttcttgtgatattttggta 800
Query: 601 aataatgtgagtggttttgcccttgtctaaagagtctgcctgag 644
|| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 801 aagaatgtgagtgattttgcccttgtctaaagagtctgcctgag 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
