BAC Information

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BAC

Clone NameMSMg01-207A03
Chromosome3 (Build37)
Map Location 18,389,314 - 18,389,883
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207A03.T7 (MSMg01no207_a03.b1)MSMg01-207A03.TJ (MSMg01no207_a03.g1)
ACCAG390404AG390405
length1,1451,221
length of high quality
(start - end)
718 (43 - 760)384 (71 - 454)
definitionCHROMAT_FILE: MSMg01no207_a03.b1 PHD_FILE: MSMg01no207_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:22 2005CHROMAT_FILE: MSMg01no207_a03.g1 PHD_FILE: MSMg01no207_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCATTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTATTGCGGTCAGGGCCTTATATAAGAGATTTAAAATGCTCTCAGAG
AAAAGGGCATTCCTATAGATAGGAGATAGTGTGCAGGGGCTGAAAATCTA
TTACAGGCCAAAGGAAAGAAAATGTAAAATGTCAGCAAGGCTGACATAGT
ATTTGGAGACAAACGCTTGCCTTGGTTAATTCTGCAGCAGAGTTGGTGTA
CTACTGGGCATGTGACTACAGAGGATGTAGGCCTACTAAGTGTGCTAGTC
AATAATCTTAGAGAGTCAGGAGGCCAAGGCAGGAGCATTGCAAATTCAAG
GCTAGTCTGCGGGAACCTAACCAGACCTTTACACAAAATACATTAGAAAA
AAGACTTACATGCAACTTAGCAGTGCGAGCTTGCCTGCTAGGTACAGTGT
CCTAGGATCAATTGCCAGCTGCACACACAGAGGTAGAATGAAAAACAAAG
AAGTATACCAAGGCCTCAAATGCTCAGACTATGGATTTTAATGCCAATTT
TTTTTATTTAAGTACTAAATAGTAGTATGACTTTCACCCTGAATTGTTAC
TTTGTCCTCAGATAAGAACCTCACAGATTATTCAATAAATAGCATTCTGA
ATCATCCTGCTATTACTTCTGCTACCATCTGCAAGCCATGCCTTATACGG
TATTCCATGTGCTTAAATAAATTGGTTGTGAGGATGTAGTTGGATACTGA
ACCTATACATAATTCTGGTATGCATGGGAAGGTGTCATTTTATATGCTCA
TCCATCATTTCCCAGGATAATTTAAATGGGGGCTTCCCTGAATCCAGTCC
AAGCAGACTACCACTAATCAAAAAACCATTGTGTGTGTTGTGTTTTATTT
CTTTCTCTCCTTTCTCATATCTACTTATTTTCAACATTCCCACTTCTTAT
TTTTCTTTTTCTCTTATTTCTCATTTTTCTTCTATCTTCTCTCTTATTCT
TCCTCTCTTTCTATCTTTTTTTTTATTCTTTCTTTTTTCTCCTCCTTTTC
TTTCCTTTTTATCATCTTTACCTCATTTTTTCTTCTTCCCTCTTTCTCTT
ATCTCTTTTCTTTACTTAACTTTTTTCTTTACTTCTTTCTCCTCC
NNNGGGCAGATGGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGATCTTTCCAAGACTTTTATCATGAAAG
GGGTGATGACTTTTGTTAAATGCTTTCTCAACATCTAATGAGATGATCAT
TTTTTTTTCCTTTAAGATTGTTTATATGAGAGCCAGAGAGCTTCTGAGGC
GGCACCATCTTCTGCTCCAGACAACCGGCCACCTTCCTGGTGAGAGCACA
GGGGTCCGCCCGGCCCGAGAGGTTTGTGCCTCAGGCCCCGGCGGCAGGAG
CCTCCTTGGCTCCGGGACTCCACGGAGGGCAGGCTGCACGGGTGAGGGTG
TGGAATACAGAGGCCAGCTGTTTCTGGGCCAGGCGAGAGCCACAGAGCTT
CTGAGGCGGCGCCATCTTCGGCTCCAGGCAACCGGCCACCTTCCTGGCCA
AAGCATCTCAGCTCCTGGGAAAGATCCTGTTTTGGGCCTTCATCTTCAGC
CAGGAGGAGGTCCAAACACCAGATAACTGTGCACCTTCCCTGAAAGAGGA
GAGCTTGCCTGCAGGGACTGCTCTCACCACTGAAACTCAGAGGAGAGAGC
TAGTCTCCCACGTCTGCTGATAGAGGGTAACAAAATCAACAGAGGAACAA
TCTCTAAACAAAGACAACTATAAAAACTAACTCCAGAGATTGCCAGATGG
CGAAAGGTAAACGTAAGAATCCTACTAACAGAAACCAGGACCACTCACCA
TCATCAGAACCCAGAACGTCCACTTTGCCAAGTCCAGGGCATCCTAACAC
ACCTGAAAAAGTAGACCTGGATTTAAAAGCATATCTCATGATGATGGTAG
AGGACATAAAGAAGGAATTTTTTAACTCCCTTAGGAAAAACAGGAAACAC
CTGCTAAGGGTTTCAGGCCTTTATGAAAAACAGGAATAACCCCCCCACAG
GTTGAATTCCTTTTATTAAAAAGGGAAACACTTCTCCCCGATGGGGGAGT
GGATCAAACCCTCCTAACCTCAAATGGGGGTATGTCCATGCTAAAACCCT
ACTGTGGCACGCTTCTGATATAAATTTTTAATAATTCTTGGTCTTTAATT
CCTCTTTCCTCCAATATTTCAGATGTAAAGAAAATTTCCGGCAAATTTCT
TTTTAAATATTGTCCTCTTCTCTAAAATGGTTTGGTTAATTCTCTTTTTA
TTCTTTTTTCTCCGCCTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_a03.b1 MSMg01no207_a03.b1 CHROMAT_FILE:
MSMg01no207_a03.b1 PHD_FILE: MSMg01no207_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:22 2005
         (718 letters)



>mm_chr3_18388768_18389883
          Length = 1116

 Score = 1029 bits (532), Expect = 0.0
 Identities = 562/572 (98%), Gaps = 2/572 (0%)
 Strand = Plus / Minus

                                                                        
Query: 147  ggctgacatagtatttggagacaaacgcttgccttggttaattctgcagcagagttggtg 206
            ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1116 ggctggcatagtatttggagacaaacacttgccttggttaattctgcagcagagttggtg 1057

                                                                        
Query: 207  tactactgggcatgtgactacagaggatgtaggcctactaagtgtgctagtcaataatct 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tactactgggcatgtgactacagaggatgtaggcctactaagtgtgctagtcaataatct 997

                                                                        
Query: 267  tagagagtcaggaggccaaggcaggagcattgcaaattcaaggctagtctgcgggaacct 326
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 996  tagagagtcaggaggccaaggcaggagcattgcaagttcaaggctagtctgcgggaacct 937

                                                                        
Query: 327  aaccagacctttacacaaaatacattagaaaaaagacttacatgcaacttagcagtgcga 386
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 936  aaccagacctttacacaaaatacatta-aaaaaagacttacatgcaacttagcagtgcaa 878

                                                                        
Query: 387  gcttgcctgctaggtacagtgtcctaggatcaattgccagctgcacacacagaggtagaa 446
            ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 877  gcttgcctgccgggtacagtgtcctaggatcaattgccagctgcagacacagaggtagaa 818

                                                                        
Query: 447  tgaaaaacaaagaagtataccaaggcctcaaatgctcagactatggattttaatgccaat 506
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 817  tgaaaaacaaagaagtataccaaggcctcaaacgctcagactatggattttaatgccaa- 759

                                                                        
Query: 507  tttttttatttaagtactaaatagtagtatgactttcaccctgaattgttactttgtcct 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758  tttttttatttaagtactaaatagtagtatgactttcaccctgaattgttactttgtcct 699

                                                                        
Query: 567  cagataagaacctcacagattattcaataaatagcattctgaatcatcctgctattactt 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698  cagataagaacctcacagattattcaataaatagcattctgaatcatcctgctattactt 639

                                                                        
Query: 627  ctgctaccatctgcaagccatgccttatacggtattccatgtgcttaaataaattggttg 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638  ctgctaccatctgcaagccatgccttatacggtattccatgtgcttaaataaattggttg 579

                                            
Query: 687  tgaggatgtagttggatactgaacctatacat 718
            ||||||||||||||||||||||||||||||||
Sbjct: 578  tgaggatgtagttggatactgaacctatacat 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1116
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1106
Effective search space:   783048
Effective search space used:   783048
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)