Query= MSMg01no207_g04.b1 MSMg01no207_g04.b1 CHROMAT_FILE:
MSMg01no207_g04.b1 PHD_FILE: MSMg01no207_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:15 2005
(430 letters)
>mm_chr3_22665191_22666021
Length = 831
Score = 737 bits (381), Expect = 0.0
Identities = 405/413 (98%), Gaps = 3/413 (0%)
Strand = Plus / Minus
Query: 16 gaattcaaaccaataatagcacagggctattactgaagaagaagccacacttagaaacct 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gaattcaaaccaataatagcacagggctattactgaagaagaagccacacttagaaacct 568
Query: 76 gcccactgtgatacatttcaggtgatttgtagcctgaatacacaaggtagcactaacaca 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcccactgtgatacatttcaggtgatttgtagcctgaatacacaaggtagcactaacaca 508
Query: 136 ggtttaaggtgttcagtgct-attgctctcactgctcaatttcccttgc-accttcccac 193
| |||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||
Sbjct: 507 gttttaaggtgttcagtg-taattgctctcactgctcaatttcccttgctaccttcccac 449
Query: 194 aaagtctagaactgttaacattgttgaattcccattcatttctttcaatacaccatggat 253
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 448 aaagtctagaactgttaacattgttgaactcccattcatttctttcaatacaccatggat 389
Query: 254 ttcctaagctgtctgagctctcatctgtcctactattgctctttgacgtaatataagata 313
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 388 ttcctaagctgtctgagctctcatctgtcctactattgctctttgacgtactataagaca 329
Query: 314 aatctacagtattttctgtaactttacatcctttctccataaaaaagaaaatcccaagtt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatctacagtattttctgtaactttacatcctttctccataaaaaagaaaatcccaagtt 269
Query: 374 ttcaactgtactaaaaggaaaaaaatatgtgataaagtttaaagaatgctgtt 426
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 268 ttcaactgtactaaaaggaaaaaaatacgtgataaagtttaaagaatgctgtt 216
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 831
Length adjustment: 9
Effective length of query: 421
Effective length of database: 822
Effective search space: 346062
Effective search space used: 346062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no207_g04.g1 MSMg01no207_g04.g1 CHROMAT_FILE:
MSMg01no207_g04.g1 PHD_FILE: MSMg01no207_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:15 2005
(750 letters)
>mm_chr3_22662872_22664020
Length = 1149
Score = 1382 bits (715), Expect = 0.0
Identities = 742/751 (98%), Gaps = 3/751 (0%)
Strand = Plus / Plus
Query: 1 tcattgttagagtatttaaatattatgtcttaattttaattaatggtcagaagtaattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattgttagagtatttaaatattatgtcttaattttaattaatggtcagaagtaattgt 260
Query: 61 tgcttttgtaattttgttcattaaattaaaaacaaccattgaggtttttcaaccatccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttttgtaattttgttcattaaattaaaaacaaccattgaggtttttcaaccatccat 320
Query: 121 taattcaaatttctcattcaaattcttcgtgacaaatattcttaagagttgagaatgctc 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 taattcaaatttctcattcaaattcttcgtgacaaatattcttaagagctgagaatgctc 380
Query: 181 ccagtgaacttacagtctactggaagatgaaataaatatatataagtatttgtgctgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagtgaacttacagtctactggaagatgaaataaatatatataagtatttgtgctgtct 440
Query: 241 tttaacctcagtttctaagaatatagtgttaacatttgagattgctaattctgtttttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaacctcagtttctaagaatatagtgttaacatttgagattgctaattctgtttttcc 500
Query: 301 caaatcaggaagttgtataatttttcttattacctctattagtacagttttgttttaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaatcaggaagttgtataatttttcttattacctctattagtacagttttgttttaaaa 560
Query: 361 attgatcacaaattaagttgttttgtatttatttctatattttagtttaaaattcttcaa 420
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 561 attgatcacaaattaagttgttttgtatatatttctacattttagtttaaaattcttcaa 620
Query: 421 ctact-ttctggatataaaataggtacaaaaaaggtcaacaaaaaaatgcaagtataaag 479
||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 cta-tgttctggatataaaataggtacaaaaaaggtcaacaaaaaa-tgcaagtataaag 678
Query: 480 aaatattgtaatgaataaattttcccccattacatgtagcaacagtttttcaaaaatatt 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 679 aaatattgtaatgaataaattttcccccattacatgtagcaacaatttttcaaaaatatt 738
Query: 540 aaattttaatgtgaatttgatgtatttttaatatttttattcttgattaatgaatggttt 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaattttaacgtgaatttgatgtatttttaatatttttattcttgattaatgaatggttt 798
Query: 600 tacaatgactttcaataaatcaaattttaaaatgaaattaaatatttaggttatattttt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tacaatgactttcaataaatcaaattttaaaatgaaattaaatatttaggttatattttt 858
Query: 660 attttgattgatatttgtttgtttaagggcatatagctgatactgaatatagatacaata 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 859 attttgattgatatttgtttgtttaagggcatatagctgatactgtatatagatacaata 918
Query: 720 agcagtaagtagccaaaattggatcagaaaa 750
|||||||||||||||||||||||||||||||
Sbjct: 919 agcagtaagtagccaaaattggatcagaaaa 949
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 750
Length of database: 1149
Length adjustment: 10
Effective length of query: 740
Effective length of database: 1139
Effective search space: 842860
Effective search space used: 842860
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
