Query= MSMg01no208_k05.b1 MSMg01no208_k05.b1 CHROMAT_FILE:
MSMg01no208_k05.b1 PHD_FILE: MSMg01no208_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:31 2005
(317 letters)
>mm_chr3_18089284_18090001
Length = 718
Score = 518 bits (268), Expect = e-151
Identities = 304/316 (96%), Gaps = 5/316 (1%)
Strand = Plus / Minus
Query: 5 gaattcactactatatgatccccgttttttgt-ttttgtttttgtttttg-tttttctgg 62
|||||||||||||||||||||||||||||| | ||||| ||||| ||||| |||||||||
Sbjct: 572 gaattcactactatatgatccccgttttttttgttttg-ttttg-ttttgttttttctgg 515
Query: 63 aaggataacatggaaaaaagtcactcaagtaaaaaaatcacacaggtccctcacaacttt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaggataacatggaaaaaagtcactcaagtaaaaaaatcacacaggtccctcacaacttt 455
Query: 123 gaacatatcagggatatggaaaggctctgtgttaccacaatttgtggctatagtaatttc 182
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 454 gaacacatcagggatatggaaaggctctgtgttaccacaatttgtggctataataatttc 395
Query: 183 aatgcaaaagtaatagtagtataattatgttaggttatttttt-agaagatattgtagaa 241
||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct: 394 aatgcaaaagtaatagtagtataattatgttgggtgatttttttagaagatattgtagaa 335
Query: 242 aatatttatcacctaatgctctgttaaaaattgctatacatggatatgatttatgtcaaa 301
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 334 aatatttatcacctaatgctctgttaaaaattactatacatggttatgatttatgtcaaa 275
Query: 302 agcaaagcttatttga 317
||||||||||||||||
Sbjct: 274 agcaaagcttatttga 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space: 218372
Effective search space used: 218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no208_k05.g1 MSMg01no208_k05.g1 CHROMAT_FILE:
MSMg01no208_k05.g1 PHD_FILE: MSMg01no208_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:31 2005
(287 letters)
>mm_chr3_17973656_17974342
Length = 687
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%)
Strand = Plus / Plus
Query: 1 atttatttagggtagttggtctgcactcttaaattttgccacactgccaaaatggtccag 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 atttatttagggtagttggtctgcactcttaaattttggcacactgccaaaatggtccag 260
Query: 61 ttcaactctcatttgagtgttaaagagtgttaaagggtgcttagtgactttactttagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaactctcatttgagtgttaaagagtgttaaagggtgcttagtgactttactttagtt 320
Query: 121 cattgtgaattaaactttcaattaaattaattaattaatgctcatggtttgagttaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattgtgaattaaactttcaattaaattaattaattaatgctcatggtttgagttaaaat 380
Query: 181 gaccaattattttcgatagagctcattatatctacttaaccatcactttgatataatcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccaattattttcgatagagctcattatatctacttaaccatcactttgatataatcta 440
Query: 241 catgaagtcaaatgtagagaagtaagtaggtcaggtctaacacattt 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgaagtcaaatgtagagaagtaagtaggtcaggtctaacacattt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
