BAC Information

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BAC

Clone NameMSMg01-208O23
Chromosome3 (Build37)
Map Location 135,233,438 - 135,233,747
singlet/doubletsinglet
Overlap geneManba
Upstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, LOC668745
Downstream geneNfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208O23.T7 (MSMg01no208_o23.b1)MSMg01-208O23.TJ (MSMg01no208_o23.g1)
ACCAG391650AG391651
length710705
length of high quality
(start - end)
319 (45 - 363)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no208_o23.b1 PHD_FILE: MSMg01no208_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:54 2005CHROMAT_FILE: MSMg01no208_o23.g1 PHD_FILE: MSMg01no208_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGTGCTATGAAAGGCCTACATTACTTCAGAACCTCCACATTTGG
TTCCACACACACAATCATGTCACAGTCTAGTGGTCTCCCAAAAAGGTCAT
CGGGTGGTATGAGTCTTCTGGCCGTGCTTTAGCTGTGGAACAAAACCACA
ATCCTGGGAGATTCAAGAATCCCCGGGCATGACCTTGTCTAAGGACATCA
CCAGGATGAACGGTATTCACTGGGAAGTCATAGTGCCCCAGGCAGCAGAT
ACTTCTCGAAGGTTTTATCTCAGGCTGCCTTCTTCTCCAGCCATGCTTTA
GAAAGGCTTTGTTCCCAGTGCCCACTGAATTACAAGCCATGTCCCTTCAG
TAGGTATCTGTCAGGGAGGCGACGCTGAAGGCCTGCTGCAGCTCACTCTT
GCTGGTGGGCTTCCAAGGGTAAAACAGTACCGAGAGTTTCTTCTGAATCA
TGAGGAAGCCGTTATCACTAAATCTCCCGGGGATACCTCCTACATCCAAC
CAAACAAAGGGAGCGACCGCAGACGTTTCCAGATCAAAAACAAAAACATT
GCCCTTCTGAGAGATGTTGACCTGAAAAAAATTTAAAAAAAGGTAAGTGA
AATGAAGGACAAGAAAGAGCTACAGTCTACATCTGTCAGCTAGACATTTA
TGTAGGCCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAATGAAGGCTATGCAGTGT
TGTCTGGGGTATTAATTTTCTGCCTCCCAAATGCTGGAATCACAGCACAA
GTCACCATGCTTGCTTGCTTTCTTCCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
TCTTTCTTTCTTTCTTTCTTCCCCCCCCCCTTTCTTTCTTTCTTTGATTA
TACTGTTGCTGTCTTCCCACACCCCAAAAAAGGGCATGAGATCCCATTAC
AGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTC
TGGAAGAGCAGTCAGTGCTCTTAACCGCTTTCCTGCGGTTAAGTTGTGAG
CTGTCTTCCTAGCCCCCATGCCCACCTTCTTATCCGTTGGGTTAGAGCTT
GATATGACCTCATTCAAACTCAATGATTGATGTCTTTAAAGCATTATTTT
CAAATAAGGTCCCATTTTGTGGTTTGAAGTAGACCTGACCTTTGGGGAAC
ACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_o23.b1 MSMg01no208_o23.b1 CHROMAT_FILE:
MSMg01no208_o23.b1 PHD_FILE: MSMg01no208_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:54 2005
         (319 letters)



>mm_chr3_135233234_135233948
          Length = 715

 Score =  518 bits (268), Expect = e-151
 Identities = 301/314 (95%), Gaps = 4/314 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggtgctatgaaaggcctacattacttcagaacctccacatttggttccacac 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 514 gaattcctggtgctatgaaaggcctacattacttcagaacctccacatttggttc----c 459

                                                                       
Query: 65  acacaatcatgtcacagtctagtggtctcccaaaaaggtcatcgggtggtatgagtcttc 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 458 acacaatcatgtcacagtctagtggtctcccaaaaaggtcattgggtggtatgagtcttc 399

                                                                       
Query: 125 tggccgtgctttagctgtggaacaaaaccacaatcctgggagattcaagaatccccgggc 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tggccgtgctttagctgtgggacaaaaccacaatcctgggagattcaagaatccccgggc 339

                                                                       
Query: 185 atgaccttgtctaaggacatcaccaggatgaacggtattcactgggaagtcatagtgccc 244
           |||||||||||||| |||||||||||||||||| |||||||||||||||||||||  |||
Sbjct: 338 atgaccttgtctaaagacatcaccaggatgaacagtattcactgggaagtcatagcaccc 279

                                                                       
Query: 245 caggcagcagatacttctcgaaggttttatctcaggctgccttcttctccagccatgctt 304
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caggcagcagatacttcttgacggttttatctcaggctgccttcttctccagccatgctt 219

                         
Query: 305 tagaaaggctttgt 318
           ||||||| ||||||
Sbjct: 218 tagaaagcctttgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 715
Length adjustment: 9
Effective length of query: 310
Effective length of database: 706
Effective search space:   218860
Effective search space used:   218860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)