BAC Information

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BAC

Clone NameMSMg01-209G17
Chromosome3 (Build37)
Map Location 20,622,341 - 20,622,646
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094, LOC100040325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209G17.T7 (MSMg01no209_g17.b1)MSMg01-209G17.TJ (MSMg01no209_g17.g1)
ACCAG391950AG391951
length729729
length of high quality
(start - end)
306 (424 - 729)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no209_g17.b1 PHD_FILE: MSMg01no209_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:32 2005CHROMAT_FILE: MSMg01no209_g17.g1 PHD_FILE: MSMg01no209_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCATCTCCCTCAACCAAAATGTAAAGACATCAAGGAATATGTT
ATGTTTCATTCACCTATATTCCCCTTGTGGGGCTATGTTAAGACCTACAA
CATTTCAAATATTTGAATAGATGAATATTACATATTTAATTCATTTGGTG
ATATCATAGGATTGTAGGAAATTTTAATCAAATAAAAGGCATATTGCTAC
AAACTGTAGATAAAAAAAAATCTACTTTTGACTCTCTGCCAGGGTCTGCA
GACACTGGAATATATTCATAGTTGTTTACAAAAAAAGATTCATGAAGTTT
TCAGCACTGATAGAGATGGACCACACCATTCACATTACATATTGTGATCT
CCATGGAAATGAACCCCACCACTCTTAGACTATGCAGAACTATTTTTGGG
TGGAAAAAAAAAGGTGGTCTAAGGAGATGACAGCGTAGACATGGATCAGG
CATGTCACATAGATTTAGGGAGCCTGACCAGAGAATGAAAAGTTAGAGAC
CAAAGGCAACCACTATGAAATTCAGCCCACCACAAGGGAAGTGGATGTCA
CTAGTGCTACACTAAATTTGAATGGCATAGATGTTGGAGAAAGGATTATT
CTCAAAGTCCTTGGCTTTTACAGTTGGGTGAATAGAGGTGTTATTCCCCC
AAAATAAGGTCTAATAGGATTTGACTAAG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCATAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACTTCTTCTGGCCCCACCCCCCCAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCACCACGCCCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGAAACTCAAGAAGAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_g17.b1 MSMg01no209_g17.b1 CHROMAT_FILE:
MSMg01no209_g17.b1 PHD_FILE: MSMg01no209_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:32 2005
         (306 letters)



>mm_chr3_20622141_20622846
          Length = 706

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagactatgcagaactatttttgggtggaaaaaaaaaggtggtctaaggagatgacag 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagactatgcagaactattgttgggtggaaaaaaaaaggtggtctaaggagatgacag 260

                                                                       
Query: 61  cgtagacatggatcaggcatgtcacatagatttagggagcctgaccagagaatgaaaagt 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctagacatggatcaggcatgtcacatagatttagggagcctgaccagagaatgaaaagt 320

                                                                       
Query: 121 tagagaccaaaggcaaccactatgaaattcagcccaccacaagggaagtggatgtcacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagagaccaaaggcaaccactatgaaattcagcccaccacaagggaagtggatgtcacta 380

                                                                       
Query: 181 gtgctacactaaatttgaatggcatagatgttggagaaaggattattctcaaagtccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctacactaaatttgaatggcatagatgttggagaaaggattattctcaaagtccttg 440

                                                                       
Query: 241 gcttttacagttgggtgaatagaggtgttattcccccaaaataaggtctaataggatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttttacagttgggtgaatagaggtgttattcccccaaaataaggtctaataggatttg 500

                 
Query: 301 actaag 306
           | ||||
Sbjct: 501 aataag 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)