BAC Information

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BAC

Clone NameMSMg01-209G19
Chromosome3 (Build37)
Map Location 16,302,194 - 16,302,367
singlet/doubletsinglet
Overlap geneLOC100040034
Upstream geneLOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3
Downstream geneLOC100040059, EG383936, LOC622737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209G19.T7 (MSMg01no209_g19.b1)MSMg01-209G19.TJ (MSMg01no209_g19.g1)
ACCAG391954AG391955
length723778
length of high quality
(start - end)
325 (46 - 370)280 (76 - 355)
definitionCHROMAT_FILE: MSMg01no209_g19.b1 PHD_FILE: MSMg01no209_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:33 2005CHROMAT_FILE: MSMg01no209_g19.g1 PHD_FILE: MSMg01no209_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTGGTGTACTTTTTAGGGTCACTTATATATGCTATCATATCATC
TGCAAAAGTGATATTTTTACTCCTCTCTTTCCAATTTGTATCCCCTTGAT
CTCTTTTTGTTGTCTAATTGCTCTCTCTAGGACTTCAAGTACAATGTTGA
ATAGGTAGGGCGAGAGTGGACAGCCTGGTCTAGTCCCTGATTTTAGTGGG
ATTGCATCCTACTTCTCACCATTTACTTTGATGTTGGCTATTGGTTTGCT
GTAGATTGCTTTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATCTTT
CCAAGACTTTTATCATGAATGCCGCGCTGGATTTTGTCAAATGCTTTCTC
AGCATCTAACGAGACCACCACCTAAATTTTGTCTTTGAGTTTGTTTATAT
ACTGGATTACGTTGATTGCACCTGTTTTCTTATGTGGACATTTATATACA
GTTCACATGCATGAGTATGCACATCTAGAAGTCTGTACACCTATGGCAGG
TATCTTCCCTAGTCACTCTCTACCCTATTTTTTTAGACATGGTCTCTCAA
TGAAGCTAGAACTTGCTGATTGGCTGGACTGTCTGGCAAGAATGCTAATA
GAATCTTCTGGACTCTATTTTATCTCTGTCCCTTCACATTGGAAGAGCAG
ACATATGCTCCCTGACCATATTT
CCATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTGAAGAATATTGAAAGAGAAAT
AGTCTTCTCCAGGGAAAAGTATACCAATTGATACAGTACCAGTTAATTAC
TAGAACTTTTTACAAAAATATCCTATTCCTTCAGTTATCTACATGTCTGT
TGATGTGGGGGTCTGCCCAGAAGCAATTTTTTCCTGCTAGTAGCTACCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATATATATATATATATA
TATATATATATATATATATATATATATGTATAGAGAGAGAGAGAGAGAGA
GAGAGAGTTTTTTTTTCCCCCCCCCACGCCCCCTGATATTATAGTTTTAT
TATTGTGTGAGATTTGTTTCCCCCCCCACAAAAAAAAATATATTAGGGGT
GGGGGGTGTTTTATCTCTCTTCCCCGCCGTTCATTGATAGTTCTTCATCT
CCTTTTTTTTTGCTATATCTATTATACCTCCTTTTTTTCCCCTCCTCCCC
ACTTCTTTTTTTTCTTCTCTCTTATTCTCCTACCACATTTTACACCCCAC
TTTCGATTGTTTTTCATTTTACCTCCCTTATCCCAATTATTCATTGAACC
GTAAAATATATTTACGCATCTTTAAATTTCTTTAACTCTTATATTCCTTC
AATCTATCCTTATTCCCTTTATCCTTCCCCATTCCCCCTTTATTTACCCC
TAATCCCTTTAATAATTTATCTACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_g19.g1 MSMg01no209_g19.g1 CHROMAT_FILE:
MSMg01no209_g19.g1 PHD_FILE: MSMg01no209_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:33 2005
         (280 letters)



>mm_chr3_16301994_16302673
          Length = 680

 Score =  286 bits (148), Expect = 8e-82
 Identities = 172/188 (91%), Gaps = 14/188 (7%)
 Strand = Plus / Minus

                                                                       
Query: 65  cagttaattactagaactttttacaaaaatatcctattccttcagttatctacatgtctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cagttaattactagaactttttacaaaaatatcctattccttcagttatctacatgtctg 315

                                                                       
Query: 125 ttgatgtgggggtctgcccagaagcaattttttcctgctagtagctacctctctctctct 184
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 314 ttgatgtgggggtctgcccagaagcaactttttcctgctagtggctacctctctctctct 255

                                                                       
Query: 185 ctctctctctctctctctctctgtatatatatatatatatatatatatatatatatatat 244
           ||||||||| |             ||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctctctctc-c-------------atatatatatatatatatatatatatatatatatat 209

                   
Query: 245 atatatat 252
           ||||||||
Sbjct: 208 atatatat 201



 Score =  116 bits (60), Expect = 1e-30
 Identities = 66/70 (94%), Gaps = 4/70 (5%)
 Strand = Plus / Plus

                                                                       
Query: 209 atatatatatatatatatatatatatatatatatatatatatatgtatagagagagagag 268
           |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 201 atatatatatatatatatatatatatatatatatatatatatatg----gagagagagag 256

                     
Query: 269 agagagagag 278
           ||||||||||
Sbjct: 257 agagagagag 266



 Score = 60.7 bits (31), Expect = 1e-13
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 208 tatatatatatatatatatatatatatatat 238
           |||||||||||||||||||||||||||||||
Sbjct: 214 tatatatatatatatatatatatatatatat 244



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 223 atatatatatatatatatatatatatata 251
           |||||||||||||||||||||||||||||
Sbjct: 29  atatatatatatatatatatatatatata 1



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 221 atatatatatatatatatatatatatata 249
           |||||||||||||||||||||||||||||
Sbjct: 29  atatatatatatatatatatatatatata 1



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 219 atatatatatatatatatatatatatata 247
           |||||||||||||||||||||||||||||
Sbjct: 29  atatatatatatatatatatatatatata 1



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 217 atatatatatatatatatatatatatata 245
           |||||||||||||||||||||||||||||
Sbjct: 29  atatatatatatatatatatatatatata 1



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 215 atatatatatatatatatatatatatata 243
           |||||||||||||||||||||||||||||
Sbjct: 29  atatatatatatatatatatatatatata 1



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 213 atatatatatatatatatatatatatata 241
           |||||||||||||||||||||||||||||
Sbjct: 29  atatatatatatatatatatatatatata 1



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 211 atatatatatatatatatatatatatata 239
           |||||||||||||||||||||||||||||
Sbjct: 29  atatatatatatatatatatatatatata 1



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                        
Query: 209 atatatatatatatatatatatatatata 237
           |||||||||||||||||||||||||||||
Sbjct: 29  atatatatatatatatatatatatatata 1



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 208 tatatatatatatatatatatatatatat 236
           |||||||||||||||||||||||||||||
Sbjct: 1   tatatatatatatatatatatatatatat 29



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 210 tatatatatatatatatatatatatatat 238
           |||||||||||||||||||||||||||||
Sbjct: 1   tatatatatatatatatatatatatatat 29



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 212 tatatatatatatatatatatatatatat 240
           |||||||||||||||||||||||||||||
Sbjct: 1   tatatatatatatatatatatatatatat 29



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 214 tatatatatatatatatatatatatatat 242
           |||||||||||||||||||||||||||||
Sbjct: 1   tatatatatatatatatatatatatatat 29



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 216 tatatatatatatatatatatatatatat 244
           |||||||||||||||||||||||||||||
Sbjct: 1   tatatatatatatatatatatatatatat 29



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 218 tatatatatatatatatatatatatatat 246
           |||||||||||||||||||||||||||||
Sbjct: 1   tatatatatatatatatatatatatatat 29



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 220 tatatatatatatatatatatatatatat 248
           |||||||||||||||||||||||||||||
Sbjct: 1   tatatatatatatatatatatatatatat 29



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 222 tatatatatatatatatatatatatatat 250
           |||||||||||||||||||||||||||||
Sbjct: 1   tatatatatatatatatatatatatatat 29



 Score = 56.8 bits (29), Expect = 1e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 224 tatatatatatatatatatatatatatat 252
           |||||||||||||||||||||||||||||
Sbjct: 1   tatatatatatatatatatatatatatat 29



 Score = 54.9 bits (28), Expect = 6e-12
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 208 tatatatatatatatatatatatatata 235
           ||||||||||||||||||||||||||||
Sbjct: 28  tatatatatatatatatatatatatata 1



 Score = 54.9 bits (28), Expect = 6e-12
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 225 atatatatatatatatatatatatatat 252
           ||||||||||||||||||||||||||||
Sbjct: 29  atatatatatatatatatatatatatat 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 180
Number of extensions: 54
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 22
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)