BAC Information

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BAC

Clone NameMSMg01-209H13
Chromosome3 (Build37)
Map Location 3,323,710 - 3,323,989
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667655
Downstream geneLOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209H13.T7 (MSMg01no209_h13.b1)MSMg01-209H13.TJ (MSMg01no209_h13.g1)
ACCAG391983AG391984
length737699
length of high quality
(start - end)
270 (47 - 316)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no209_h13.b1 PHD_FILE: MSMg01no209_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:36 2005CHROMAT_FILE: MSMg01no209_h13.g1 PHD_FILE: MSMg01no209_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCACTATTCCATATGTCCCTGAACTTTTTTTGGTTGGGAGACT
TCTGAGGATTGCTTCTATTTCTCTAGGTGTTATGGGACTGTTTAGGTGGC
TTTTTTGATCCTGACTTAACTTTGGTACCTGGTATCTGCCTAAAAAATTA
TCCATTTCATGCAGAATTTACAGGGTTGTTTTTTGTTGTTGTTTGTTTGT
TTGTTTGTTTGTTTTTAGTATAAGCTTTTGCAGCAAGATCTGATGATTTT
TTGAAATTCCTCGCTTTCTGTTTTTACGTTTCCCTTTTCATTTCTGATAT
TGTTCATTTGTATTCTGCCACTCCGCCTCTTATTTACATTGTCTATCGCT
TTATTTATCCTTGTTGACCCCCCCCAATAATCACCTCTTAGTTTGGTGCA
GTTCTCATTGTTTCTAATTAGGCGATCCCATCTCTGACAATTGATTATTT
CTCGTGACGCATTCTTTCATGTATTTGCCTGCTTCTTTTTTTTTCCGCTT
TTTTCCATTTGTTTTCTTCGTGCCACTGTTAAATTTCTTTCCAATCCCTC
CTCTTTCTATCTCTTTTCTACCTCTTTTTGGTCTTCTTCCCCCTCTTTTC
CTTTTTCCTTTTCCTTTTCCCCTCTTTTCCCTTCCCCCCCCCCTTTTCCT
CCTTCTCCCCCCCCTTTATCTCTCCTTTTTCCCCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGTTTAGATTTGAATCCCATTT
ATACATTAGATATTTGTTTGTTTGTTTTTGTTTTTCACAGCTAGATTCTT
GGGTTTTTTATGTATTTTGGATATTAGTTCTCTATTAGATGTAGAAACCC
ATTCCCCCTAATTCTCGTGGTTGCTTTTCCTATCCTGGTGCATCAGGAAG
GTTCGTTGCCCAAGCTCACAAGCTCGAATAAAGGCTCTCATGTACTTGCA
TCAAAATTAAAAAAAAAATAATTAAAGAATTGGTAAAAAATCTTTATCCA
ATCTGTATTTTTTTTTTTCCCACAACCGCCGCTGTCTTTTGCCTTACAGA
AGCTTTTCAGTTTCCTAACGCCCCATGAATTAATTGTTTTTCTTAGCACC
TATGTTATTTTTTTTCTTTTGTTTTAAAGAATGTCTTCTCCTGTGGTGAT
ATGTTGACTTTTATGCTCTCGTCTCTCTTCCGTCAGATTCAATGTGTTTG
GTTTTAGAGTGAGGTTTTGGATCCACTTGCAGTTGAATTTTGCGCTGGAT
TATAACACTAGATCCATTTGAGTTCTTCAAGATGCATGCATCCAGTTAGA
TTACACCTACTTGCTGCAATTGGTATATTTTTTTTCATTTTTGCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_h13.g1 MSMg01no209_h13.g1 CHROMAT_FILE:
MSMg01no209_h13.g1 PHD_FILE: MSMg01no209_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:36 2005
         (284 letters)



>mm_chr3_3323448_3324131
          Length = 684

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%), Gaps = 1/281 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtttagatttgaatcccatttatacattagatatttgtttgtttgtttttgtttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 catgtttagatttgaatcccatttatacattagatatttgtttgtttgtttttgtttttc 483

                                                                       
Query: 61  acagctagattcttgggttttttatgtattttggatattagttctctattagatgtagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acagctagattcttgggttttttatgtattttggatattagttctctattagatgtagaa 423

                                                                       
Query: 121 acccattccccctaattctcgtggttgcttttcctatcctggtgcatcaggaaggttcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acccattccccctaattctcgtggttgcttttcctatcctggtgcatcaggaaggttcgt 363

                                                                       
Query: 181 tgcccaagctcacaagctcgaataaaggctctcatgtacttgcatcaaaattaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 362 tgcccaagctcacaagctcgaataaaggctctcatgtacttgcatcaaaatgaaaaaaaa 303

                                                    
Query: 241 aataattaaagaattggtaaaaaatctttatccaatctgta 281
           || || ||||||||||||||||| |||||||||||||||||
Sbjct: 302 aaaaaataaagaattggtaaaaa-tctttatccaatctgta 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)