BAC Information

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BAC

Clone NameMSMg01-209O23
Chromosome3 (Build37)
Map Location 141,356,384 - 141,495,076
singlet/doubletdoublet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209O23.T7 (MSMg01no209_o23.b1)MSMg01-209O23.TJ (MSMg01no209_o23.g1)
ACCAG392260AG392261
length739742
length of high quality
(start - end)		318 (44 - 361)282 (81 - 362)
definitionCHROMAT_FILE: MSMg01no209_o23.b1 PHD_FILE: MSMg01no209_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:15 2005CHROMAT_FILE: MSMg01no209_o23.g1 PHD_FILE: MSMg01no209_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,494,762 - 141,495,076)(141,356,384 - 141,356,663)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTGTAGCAGAGACAATGTGTCTGCTTTGAAAATGTTTGGCTGTG
ACTTTCTTGACACATGCTTAGACTCAAGCCAATTTGAATTAATGTCAATA
AGAAGAGAACATGAAGTTTTAGATTCCTAATCTCAGGTCTACTTCATCTG
AAGATCATTCGTCTTGATTAACAGCCACAACTTCCATGTCCATAGAGACA
GGATTCTCATTTACAAATGTAGAGCAGGTTTGAACAGGTATAGTGGTACA
TAGTTAAACTCTCACCACTTGAGAGGCTGTGGAAATAGGGTCATGGATTT
GATGATGTTCTGTTATACCCACCCCCCTATATATGCCCAAGGTGATGCCA
TGTGTGTGGAGCCCCCCCCCAGAGAATCTTCCTTCTTTGTGAATACAGTT
TATATTTCTAAAAGTCAGTGTTTGGGAGTTAAAAGATTTCAAATATGCAA
AGCCCAATGACAATTTTCAGAGACTTTTAAAAATACAGATTCCATACATG
TCTATCACAAGAAAGTAACTTAAGATGTGTATGAGTAAGTTGATGACGTG
CTATACCCAGAAAGTTGTAAAATGGATAATTTAACTGAAGAATACGAGAA
TAATAGAATTACACTTGTAGGTAACTTTCCCCATGTCTATTTGTCACAAA
TGTCGAATCCACAGGTTACTTAATTCTTTTTGTTTATTG

ACATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCTTTCCAGCAATTTGTAC
ATATGAATGAGACTGAATGTACCTATGCAGTAATTTCCCTTAATAAAAAC
ATTGAATCATGATGCACTGTAATCTTTACTGATGTTAGAATCATTAATCA
TGATTCCACATCTTACAAGTGTGCCTACATGTATTAAATAGTTTGCACTC
ATGTTCTTCCTCTGGAAATTGTTTAGCCACGGTTACATGAATGTATCTTT
TGAAGAGAATATATTTGTATGTATATATACATACATGCATGTATGCATAC
AGACATACAATTTTTTTTGCACACCCCCCCCCCTACATACACCCATACAC
ACACACACATTTATATAAAACCACAAAACAAACTTTGCCTGGAAATATAA
GCAGACAAGTGACTGAAGCTGCCTGTTCAGTAGTCAATATTATGTAGTTA
TATAAACATCTCAGGGGATTGGAGTTGGGGTGGGATACCATCTCTTTATT
TCCATTTTCTTTCTGGTGCTAGAGTGGAAGTAACATGATGATATTACAAG
TTGCAAGCAGCATTCAATGCCAGATATTACTCTCCTGTTCTCTCACGTTT
AAGTTATCTTTTTACAACAACATCTAAAGGTGTTTGCAGTCAAAGAATGA
TAATGCCAACCTAACACTATGAAAGAATGTCTCACACTCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_o23.b1 MSMg01no209_o23.b1 CHROMAT_FILE:
MSMg01no209_o23.b1 PHD_FILE: MSMg01no209_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:15 2005
         (318 letters)



>mm_chr3_141494559_141495276
          Length = 718

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgtgtagcagagacaatgtgtctgctttgaaaatgtttggctgtgactttc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattctttgtgtagcagagacaatgtgtctgctttgaaaatgtttggctgtgactttc 459

                                                                       
Query: 64  ttgacacatgcttagactcaagccaatttgaattaatgtcaataagaagagaacatgaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttgacacatgcttagactcaagccaatttgaattaatgtcaataagaagagaacatgaag 399

                                                                       
Query: 124 ttttagattcctaatctcaggtctacttcatctgaagatcattcgtcttgattaacagcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttttagattcctaatctcaggtctacttcatctgaagatcattcgtcttgattaacagcc 339

                                                                       
Query: 184 acaacttccatgtccatagagacaggattctcatttacaaatgtagagcaggtttgaaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acaacttccatgtccatagagacaggattctcatttacaaatgtagagcaggtttgaaca 279

                                                                       
Query: 244 ggtatagtggtacatagttaaactctcaccacttgagaggctgtggaaatagggtcatgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggtatagtggtacatagttaaactctcaccacttgagaggctgtggaaatagggtcatgg 219

                          
Query: 304 atttgatgatgttct 318
           |||||||||||||||
Sbjct: 218 atttgatgatgttct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no209_o23.g1 MSMg01no209_o23.g1 CHROMAT_FILE:
MSMg01no209_o23.g1 PHD_FILE: MSMg01no209_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:15 2005
         (282 letters)



>mm_chr3_141356184_141356865
          Length = 682

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctttccagcaatttgtacatatgaatgagactgaatgtacctatgcagtaatttccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctttccagcaatttgtacatatgaatgagactgaatgtacctatgcagtaatttccct 260

                                                                       
Query: 61  taataaaaacattgaatcatgatgcactgtaatctttactgatgttagaatcattaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taataaaaacattgaatcatgatgcactgtaatctttactgatgttagaatcattaatca 320

                                                                       
Query: 121 tgattccacatcttacaagtgtgcctacatgtattaaatagtttgcactcatgttcttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattccacatcttacaagtgtgcctacatgtattaaatagtttgcactcatgttcttcc 380

                                                                       
Query: 181 tctggaaattgtttagccacggttacatgaatgtatcttttgaagagaatatatttgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggaaattgtttagccacggttacatgaatgtatcttttgaagagaatatatttgtat 440

                                                   
Query: 241 gtatatatacatacatgcatgtatgcatacagacatacaa 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatatatacatacatgcatgtatgcatacagacatacaa 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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