TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTCTTCTTGTCATTTGGTGATGTACATTAAGAAAGCCTTCATGTA
TGGACATAGTTTTACATTCTTCTACTCTAGTAGATTTTGCCTTTAAAAAA
CACTTATTTTATGTCTATATGCCTTTATTTGCCCCCATTCCATTATCTAC
ACCTATCTAGCTAGTCCTTTTTTTCTTTATTTAGGTTCTATAGTTCTATA
GATTAAAGTTGTTTTATCATTAACTTAAAATCTAATACATGCTTTTACTT
CTCTCTTTGAGTCTTGGTTATCTCACTCAGCATACATTTTTCTAGATTCA
TCCATTTATTTGTTTTTTTCCCCCCCCCATATCAGAATAATAATCCATTG
TACAAATACTACAGACCACTGATGTTTAAAATCAAATAGACATACCAGAT
ATTTGCAAAACATTTCACCAAAACACAAAAGAATATATACTCATCTTAAC
ACTTCATGGAGCTTCCACCCAAATTGAGCATATACTTAAATACAAAACAC
ATTTCTACAGATACAAGAAAATTGAAATAACATCTTATATCCTATCTGAC
CATTGCATATTAATGCTGGATACCAATAGCCTAAGCAACAGAAAACTTAA
GAAAAATGGATACTGAACAATTCACTACTGAAAGAAAAAAATAGATCACG
ATGAAATTAAGATACTAACGAAA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAAAGAACTTGTCTTTGAA
TCATCGGACAGCATATAGTTATCCAATACTATGAAATATGGTCCAATGAC
TTGGCTTCTAACTCTCCTGGAATAAAAGTGCATACATAAAAGAAGTAAGA
AAGAAGTTAGGCATTAAGATAGGAATACCTGTTGTAATGAATACTGTAAA
CATAGAAGTAGGAGAGGTCTGCCACTAAGGAAATAAAAATATTTAAAAAT
TAATGGAAGTCAATTACTTGGGCCCAGTATTAAGAAAAACAACCAAAACC
TAATCCATAACCATATTGTTCATTCCCCCCCCCCCCCTAGGCTTGTTGTT
GTTGCTGGTTTTTGTTTGGTTCCCGCCATGAAATCAAGAAGCGAAAATTT
CATTGGACATCATTTTAAGGAACTTATCTGCATCTGTATATTGAGGTGTG
AGACCATGTTCTTCACTGCTGGTAATACCTGGATGATACATATATCTTAA
ATGTCACTATGATGACTCCTCCCTAAGTATATATTGTAAGCTATTAGCCT
TATATCACAAAGCCCAACATTCATGATTAAAGCTTTCAATACCTCTTTTG
CCCCCCCCACTTTATTTTCTAGACTATATTATGTTCGTACCTTTTTTGCC
GATTTTTTGTTTTCCCCTACGCCACGCTATATTT

Query= MSMg01no209_p08.b1 MSMg01no209_p08.b1 CHROMAT_FILE:
MSMg01no209_p08.b1 PHD_FILE: MSMg01no209_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:17 2005
         (316 letters)



>mm_chr3_12347057_12347772
          Length = 716

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtcttcttgtcatttggtgatgtacattaagaaagccttcatgtatggacat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtcttcttgtcatttggtgatgtacattaagaaagccttcatgtatggacat 263

                                                                       
Query: 64  agttttacattcttctactctagtagattttgcctttaaaaaacacttattttatgtcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttttacattcttctactctagtagattttgcctttaaaaaacacttattttatgtcta 323

                                                                       
Query: 124 tatgcctttatttgcccccattccattatctacacctatctagctagtcctttttttctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 tatgcctttatttgcccccattccattatctacacctatctagctagtcttttttttctt 383

                                                                       
Query: 184 tatttaggttctatagttctatagattaaagttgttttatcattaacttaaaatctaata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttaggttctatagttctatagattaaagttgttttatcattaacttaaaatctaata 443

                                                                       
Query: 244 catgcttttacttctctctttgagtcttggttatctcactcagcatacatttttctagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgcttttacttctctctttgagtcttggttatctcactcagcatacatttttctagat 503

                      
Query: 304 tcatccattta 314
           |||||||||||
Sbjct: 504 tcatccattta 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no209_p08.g1 MSMg01no209_p08.g1 CHROMAT_FILE:
MSMg01no209_p08.g1 PHD_FILE: MSMg01no209_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:17 2005
         (286 letters)



>mm_chr3_12497715_12498400
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccaaagaacttgtctttgaatcatcggacagcatatagttatccaatactatgaaa 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 404 caggccaaagaacttgtctttgaatcatcggacagcgtatagttatccaatactatgaaa 345

                                                                       
Query: 61  tatggtccaatgacttggcttctaactctcctggaataaaagtgcatacataaaagaagt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 344 tatggtccaatgacttggcttctaactctcctggaataaaagtgcatacagaaaagaagt 285

                                                                       
Query: 121 aagaaagaagttaggcattaagataggaatacctgttgtaatgaatactgtaaacataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aagaaagaagttaggcattaagataggaatacctgttgtaatgaatactgtaaacataga 225

                                                                       
Query: 181 agtaggagaggtctgccactaaggaaataaaaatatttaaaaattaatggaagtcaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agtaggagaggtctgccactaaggaaataaaaatatttaaaaattaatggaagtcaatta 165

                                                         
Query: 241 cttgggcccagtattaagaaaaacaaccaaaacctaatccataacc 286
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 164 cttgggcccagtattaagaaaaacagccaaaacctaatccataacc 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)