BAC Information

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BAC

Clone NameMSMg01-211G03
Chromosome3 (Build37)
Map Location 25,559,372 - 25,559,748
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneEG635702, LOC100039592
Downstream geneLOC621017, LOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211G03.T7 (MSMg01no211_g03.b1)MSMg01-211G03.TJ (MSMg01no211_g03.g1)
ACCAG393128AG393129
length1,2621,249
length of high quality
(start - end)
424 (31 - 454)383 (66 - 448)
definitionCHROMAT_FILE: MSMg01no211_g03.b1 PHD_FILE: MSMg01no211_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:28 2005CHROMAT_FILE: MSMg01no211_g03.g1 PHD_FILE: MSMg01no211_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCGCATTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CATGAAATTCTTAGGCAAATGGATGGATCTGGAGGATATCATCCTGAGTG
AGGTAATCCAATCACAAAAGAACACACATGATATGCACTCACTGATAAGT
GCATATTAGCCCAGAAACTGGAATATCCAAAATACAATTTGCAAATCACA
TGAAACTCAAGAAGAAGGAAGACCAAACTGGATACTTCCATCCTTCTTAG
ACGGGGGAACAAAATATGCATGGAAGAAGATACAGAGACAAGGTGTGGAA
CAGAGACTGAAGGAATGACCATCCATAGACTGCCACATCTGGGGATCCAT
TCCATTTACAACCACCAAACCCAGACACTATTTTGGATGTCAACAAGAAC
TTGCTTGCAAGAGTCTGATACAGCTGTCTCCTGTGAGGCTCTGCCAGTGC
CTGTTTTTTTACCCCCCCGGATGCTTGCAGCCATTCATTGAAAAAATCAG
ATTCCCTAATGAAGGAGCTAGAGAAAGAACCTAAGTTGCTGAAGGAGTTA
GCCGTCCCATCAGAGGAACAACAATATGAACTAACCAGTACCCCCCAGAG
CTCCCTGGGACTAAACCACCAACCAAAGAAAACACATGGTTGGACTCATG
GCTCTAACTGCATATGTAGCAGAGGATGGCCTAGTCAGTCATCAATGGGA
GGAGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGTGTAGGGGAATG
CCAGGGCCAGGAAGTGGAAGTGCGTGGGTTGGTGAGCAGGGGGAGAGGAG
AGAGCATAGGGAGTTTTCAGAGGGAAACCAGGAAAGGGGCTAACATTTGA
AATATAAATAACAAAAAAATCTAATAAAAAATGAAACAAAGAACTAAACA
CACACACACACACACACACACACACACTCAGAAATCCGTCATCTCATTTA
TGCCCATTTAGTTAGAATTCCTTTTATCTTTGATAATTACTAAGCTTGCT
CTTTACTAAAAAAGACAACTTCCTAGCACATTTCCCTGAACTTTGGTTTC
TCTAAAACTACACAAAACAAAAAACCCAACCCAACCAAACCGAAAAAAGC
TAACTTGTTTTTTAAAATGTGGGCCATGACACCCTTCTGGAACCAAAAAA
TTTTTCCAAGGGCCCTCTGTTACATACCCTCTTACCCGAAATTTTAATTT
GGGATTTAAAACGTGAAAAAAATCCTTTTTGAAAACACTATAAAAAAATT
ACTCTCTTGTTA
NNNGGAGAGACGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTCTTTCTGGTCAAGGGAAGTGGTCAGAGTATCA
CTGAAAGTACCATTGAAACTGGTCAGAGAACACAGAAGAAGCAGAAAAGC
ATTAGATTAGAGTCAGATCAAGGACCTGTGGCTTGCATTGCACAGCATAT
GGAGCCTGTGGCCAATAAAGCTGGAGATAAGTCTAGAGGGGGCAACTTGT
GAACTTAATGTATAGGATGTGTGAAATCATTAGAGAATTGAGTGTGGGGA
GAGATTCATTGCTGTGTTGAGTCCACAGGTCCTACATGATAACTGAGTAC
AGTGCACTGAGTTTAAGCCTGCTCTCGAAATAGTGCCGTCTTCAAATTTT
GTTGAGAACAAAATAACAAGTAACCATAGCAACGATCACAGGGCCTGTTT
TTTTTTTTCCCCCCCCCAANATNNAANACCTCCTCAAAAAAAAAAAAGGG
AGGGNANGCNCTCNGGAATTGTTGTCAATCATTACTGCCATACTAACTTC
TAATTCCTTAATTTATTTTAAAAATATTTAATCATTTTCTGTGTGTATGG
CCATGTGGGTGTGTTCAAGCTTGTATCTGAATGTCTGTGCACATGACTGT
AGATCTGAAGCTCAGAGGAAGACCTCAGCCACATCCTACACTGCTTCACA
CCTTAGCCCTCAATAGAGATCCAGTGATCCTAACGTTTATTATTTCATCT
AGGCTGGCAGACCAGTGACCGTTAGTGGTCTGACTGTCTTCACATAACTG
CATTGAAGTTATAGCACTTGTGACCCTATAAGGCTTTTATCTGTGTGCAG
AGCAAGGACTGCAACTCAGGTAACTATTCCATGCTCACCCAACAAGCCCC
CCCCTGAGCCTTCTTTTCCTGCCTTTAAATTAACAACTCCTTTATGTTCA
GCACTTGTACTCAATAAAGATAAACCCTGTTTTTTTTATTAAGTTTAGGA
TTACGGCATACCCCCTTGTCCCCGGTTTAACCAACTATACATTTTCCTTT
CTTGTATTCTATTAATCCCATTTTTGGCGTTCTCTCCTCCTTCTTGCGAA
CATTCCCTTTATTATTTTTGTTACATCCTCCAGTCCTTTATGTCCCTTTT
CTATCCATCAAACTTTTATCTCCTCTCTCTTGCCATCTGTTTATTCCTCT
TTTCTGCTTCTTCTTTNTCTCCCCCTTTCTCCTCTTTTCGTCCTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_g03.g1 MSMg01no211_g03.g1 CHROMAT_FILE:
MSMg01no211_g03.g1 PHD_FILE: MSMg01no211_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:28 2005
         (383 letters)



>mm_chr3_25559167_25559949
          Length = 783

 Score =  683 bits (353), Expect = 0.0
 Identities = 371/377 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   ttctggtcaagggaagtggtcagagtatcactgaaagtaccattgaaactggtcagagaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttctggtcaagggaagtggtcagagtatcactgaaagtaccattgaaactggtcagagaa 523

                                                                       
Query: 66  cacagaagaagcagaaaagcattagattagagtcagatcaaggacctgtggcttgcattg 125
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cacagaaggagcagaaaagcattagattagagtcagatcaaggacctgtggcttgcattg 463

                                                                       
Query: 126 cacagcatatggagcctgtggccaataaagctggagataagtctagagggggcaacttgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cacagcatatggagcctgtggccaataaagctggagataagtctagagggggcaacttgt 403

                                                                       
Query: 186 gaacttaatgtataggatgtgtgaaatcattagagaattgagtgtggggagagattcatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaacttaatgtataggatgtgtgaaatcattagagaattgagtgtggggagagattcatt 343

                                                                       
Query: 246 gctgtgttgagtccacaggtcctacatgataactgagtacagtgcactgagtttaagcct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gctgtgttgagtccacaggtcctacatgataactgagtacagtgcactgagtttaagcct 283

                                                                       
Query: 306 gctctcgaaatagtgccgtcttcaaattttgttgagaacaaaataacaagtaaccatagc 365
           ||||| |||||||||||||||||||||   | ||||||||||||||||||||||||||||
Sbjct: 282 gctcttgaaatagtgccgtcttcaaatagcgatgagaacaaaataacaagtaaccatagc 223

                            
Query: 366 aacgatcacagggcctg 382
           |||||||||||||||||
Sbjct: 222 aacgatcacagggcctg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)