NCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGGCCCAATATAATACATTCAGTTCCCAGTTTAAAAG
CGATCTTCAAGAAATGACTGATACTCCGCTTACTATCCAGAAACAGATGG
ATTCTTTGGCAGCAGTGGTACTTCAGAACCAATGGGGGCTAGATGTCCTG
ACAGCTAAAGGTGGTCTTTGCCTGCTTCTCCAAGAAGACTGCTGTTTTTT
GTCAACCAGCAAATTGGGATAGTAAGAAATAAAATCCAGAAGCTACAGTC
AGACTGTACGTGAGACCTCCTGTTCTGGAATTTTCAAAAATCCTATATGG
AAGTGGATACTCCCTTTCATAATGCCTGTTTTAGTCATCTTCCTGGCATT
ATTTGCTCCCTGCCTCATTAATCTTGTTTCTATATTCCTTCAACAACAAA
TACAAAAGATTTCTAACCAAACTATTAATCAGCTTCTATTACAGGATTAC
AAGCCGCTGCCCACAGAAGAGCCACTGTCCATAGGGGAACCTAATGCGAA
TGTTTACCAAGTGGATCCTGATAGTGAAAGTCAGCTACACCCCAAAATTG
ATGATGCCTCTAGACAACAAGAAGCAGCTTAAGAGATGCGATGCCTTCCT
TTTCACTATCGTCTTCTCCCTCCTTTTTTTCCCCCTTCTCTTTATAATAA
CAAAAAGGGAGATATGTTGGAAT

NCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTAGCTCTGAGCCC
CATTTTTTAATGGGGTTATTTGATTTCCTGGAGTCCACCTTCTTGAGTTC
TTTATATTTATTGGATATTAGTCCCCTATCTGATTTAGGATAGATGAAGA
TCCTTTCCCAATCTGGTCGTGGCCTTTTTTTTTCTTATTGATGCTTTGAG
CTTTACTAAAGTCTCTTTAAAGAATGTAAAGAATGCTTGTATTTGAAGCA
TAGATATCCAGAATTGAGAGTTCCTCTTGGAAGATTTTACCTTTGATGTG
TATGAACTGTCCCTCCTTGACTTTTTTGATAACTCAGGGTTAGAAGTTGA
TTTTATTCGATATTAGAATGCCTACTCCAGTTTGTTTCTCCAGTCTGTTT
GCTTGGAAAATTGTTTTCTAGCTTTTCACTCTGAGGTAGTGTCTGTCTTT
TTACCTGAGATGGGTTTCCTGTAAGCAGCAAAATGTTGGGCCCTGTTTGT
GTAGCCAGTCTGTTAGTCTATGTCTTTTTATTGGGGAATTGAGTCCATTG
ATATGAAGAGATATTAAGGAAAAGTAATTGTTGCTTCCTATTATTTTTGT
TGTTAGAGTTTGCATTCTGTTCTTGTGCTTGTCTTCTTTTAGTTGTGTTG
AAGGATTACTTTTTTGCTTT

Query= MSMg01no212_d09.b1 MSMg01no212_d09.b1 CHROMAT_FILE:
MSMg01no212_d09.b1 PHD_FILE: MSMg01no212_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:54 2005
         (664 letters)



>mm_chr3_5833220_5834283
          Length = 1064

 Score =  333 bits (172), Expect = 3e-95
 Identities = 541/698 (77%), Gaps = 84/698 (12%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttccatggcccaatataatacattcagttcccagtttaaaagcgatcttc-aagaaatga 66
           ||||||| || ||||||||| ||||| || | || |||| || ||| ||| || ||||| 
Sbjct: 212 ttccatgaccaaatataataaattcattttcaagcttaacagagattttcaaaaaaatgt 271

                                                                       
Query: 67  ctgatactcc--gcttactatccagaaacagatggattctttggcagcagtggtacttca 124
           |||| |  ||  |||| |||| |||||||| || |||||||||||||| ||||| |||||
Sbjct: 272 ctgaaa--ccatgcttgctattcagaaacaaattgattctttggcagctgtggtgcttca 329

                                                                       
Query: 125 gaaccaatgggggctagatgtcctgacagcta---aaggtggtctttgcctgcttctcca 181
           |||||||  |||||| |||||||| || ||||   ||||| ||||||  ||||| |||||
Sbjct: 330 gaaccaacaggggctggatgtccttactgctaaagaaggtagtctttaactgctcctcca 389

                                                                       
Query: 182 agaagactgctgttt-tttgtcaaccag-caaattgggatagtaagaaataaaatccaga 239
           |||||| |||||||| | |||||||||| |    |||||||||  || ||||||||||| 
Sbjct: 390 agaagaatgctgtttgtatgtcaaccagtc----tgggatagt--gagataaaatccag- 442

                                                                       
Query: 240 ag--ctacagtcagac-----------t---gtacgtgagacctcc---tgttctggaat 280
            |  ||||| ||||||           |   | | ||| |||||||   |||  ||| ||
Sbjct: 443 -gctctacaatcagacatatagaattttagggaatgtgtgacctccagttgt--tgg-at 498

                                                                       
Query: 281 tttcaaaaatcctatatggaagtggatactccctttcataatgcctgttt-tagtcatct 339
           ||||||||  ||||||| |||||||||||||| ||||||||  ||| ||| |||||||||
Sbjct: 499 tttcaaaacccctatatagaagtggatactccatttcataacacct-tttctagtcatct 557

                                                                       
Query: 340 tcct-g-gcattatttgctccctgcctcattaatcttgtttctatattccttcaacaaca 397
           |||| | |  |||||  ||||||||||||| ||||||||||||| ||||||||||  |||
Sbjct: 558 tcctagtg--ttattcactccctgcctcataaatcttgtttctacattccttcaatgaca 615

                                                                       
Query: 398 aatacaaaagatttctaaccaaactattaatcagctt-ctattacaggattacaagccgc 456
           |||||||||||||||||||||| | ||||||||| || || ||||| |||||| |||| |
Sbjct: 616 aatacaaaagatttctaaccaagccattaatcag-ttcctgttacaagattaccagcctc 674

                                                                       
Query: 457 tgcccacagaagagccactgtccataggggaacctaatgcgaatgtttaccaagtgga-t 515
           || |||||||                  |||||||||| | ||  ||||||||||||| |
Sbjct: 675 tgtccacaga------------------ggaacctaatacaaacatttaccaagtggact 716

                                                                       
Query: 516 cctgatagtgaaagtcagctacaccccaaaattgatgatgcctctagacaacaagaagca 575
            ||||| |||||||||||||||||||||||||||||||  || ||||||| || ||||||
Sbjct: 717 -ctgatggtgaaagtcagctacaccccaaaattgatgacacccctagacagcaggaagca 775

                                                                       
Query: 576 gcttaagaga--tgcgatgcc---ttccttttca-ctatc-gtcttctccctcc--tttt 626
           ||||||||||  ||  || ||   || ||||||| | ||| | |||||||||||  ||||
Sbjct: 776 gcttaagagacatgatatccccatttgcttttcaac-atcag-cttctccctcccatttt 833

                                                 
Query: 627 tttcccccttctctttataataacaaaaagggagatat 664
           ||     ||||| ||||| | || ||| ||||||||||
Sbjct: 834 tt-----cttctttttatgacaagaaatagggagatat 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)